BAC Information

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BAC

Clone NameMSMg01-232J22
ChromosomeX (Build37)
Map Location 130,129,954 - 130,207,892
singlet/doubletdoublet
Overlap genePcdh19
Upstream geneLOC665846, LOC665850, LOC665854, LOC100040794
Downstream geneLOC100040831, Tnmd, Tspan6, Srpx2, Sytl4, LOC665889, Cstf2, Nox1, Xkrx, Arl13a, 4732479N06Rik, LOC100040849, Tmem35, Cenpi, Drp2, Taf7l, LOC669370, LOC674122, Timm8a1, Btk, Rpl36a, Gla, Hnrph2, LOC665936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232J22.T7 (MSMg01no232_j22.b1)MSMg01-232J22.TJ (MSMg01no232_j22.g1)
ACCAG399068AG399069
length731728
length of high quality
(start - end)		325 (44 - 368)561 (73 - 633)
definitionCHROMAT_FILE: MSMg01no232_j22.b1 PHD_FILE: MSMg01no232_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:09 2005CHROMAT_FILE: MSMg01no232_j22.g1 PHD_FILE: MSMg01no232_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,129,954 - 130,130,274)(130,207,332 - 130,207,892)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTAAAGCACTTTCAAGGCCTTCAGAATCCAAAGAAAGGACAACTATT
CTGTGTCTATAACTTGACAAAGCACTCAGAGCACTAATGAGCTCCATGGA
AAAAGAAGCCAGGACAGGGATGGTGAAAAGGGGATAAGAGCAGGAACCAC
TGTGTGGGGCTCAGATACTCTGTGCTTGATATTTTGAGAACTGGCTTTCC
TTGGATGTCAAGATACAAGGAGAAAAGTACCTCTTCTAATTATCTAGAAA
AAAAAATTCAGTGAAGACTTAAGGACAACTCAAAGCCATAGGGGAGTGGA
ATTGCAAACAGTTCATAATGTGGAAAATTACCCACACGAGACAGTATTCC
TTCTGAACAACATGTGTGGGATATGTATGAAGGCTGAGACAGTTTTCCAG
ACTTAGGAGCCAGTAGTACTAAGCCATCCTGCAGCCAGTCTAATTCTGAT
GATGCTAACAGCTATTTGTATCTTACCCCCTTCTGCCTTTATTCCTTCCT
TAAATCATTAATTTTTGTTGTCCTCTTCCCTAGCCTCCTACTTCCAATCA
CTCCTTACTATACTCAGATACACATCAGACAGAATTAGCAGGGTGGCAGA
ACTCTGACATTTGAAAATACTGGTGTGTTGTTATTTAATAGATATCAAAA
TGTGCTCCCCACAAACCAGTTCTTATGGCAT

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTCATAATTTTTGTTTAAATTGAGTAT
TTGGGAAGGGAGAGAATGGATTCTCAGATGAAAGGAGACTGGCGGGCGGA
CAGACAAGTGTTAGGAGCAGCCACATGAGACTTGTGCATATTTGAGACTT
AAACAGACAAGAAGTTTGGTGTCAGGCCTGTGTGCTTCGTGAGCCTGGCA
TTAGTGGACTAGACCAGAGTTTCTTGATGTCAGATGCTTAAGCAATGTCT
TCATGTGCATAGTCTTCTGATGCTCCATTAAGCCTCTGAGTGCCAGGGTG
GCCAGTTTTCAGCTTCTCCCACTGGGCCCCATCTGGTTGTTGTTCTGTGG
CAAGCTGCTCTCCTTCAGCACCACCAGTAACTAGCCTTGGCGGCCTCACA
TTTTAAGATTGTTTGCTCCTAAATCTGATTTCCAGAGCATGAAGGGCACC
TTTTTACGGATTGTACTGTGTTCTTCTGGACAAAATGGAATCCTTGTGTA
AGCTGGGAGGGAGAAAATTTTAATAGAAATGTTAGATCCTTCTTTACCCT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGNNTNNTNNTTTTT
NTTTTTTTTTTTTTTTNTTTTTTTNNNNNTTTTTTTTTTTTTTTTTTTTN
TTTTTTTTTNNTNNNTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_j22.b1 MSMg01no232_j22.b1 CHROMAT_FILE:
MSMg01no232_j22.b1 PHD_FILE: MSMg01no232_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:09 2005
         (325 letters)



>mm_chrX_130129750_130130474
          Length = 725

 Score =  613 bits (317), Expect = e-180
 Identities = 320/321 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctaaagcactttcaaggccttcagaatccaaagaaaggacaactattctgtgtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaaagcactttcaaggccttcagaatccaaagaaaggacaactattctgtgtc 264

                                                                       
Query: 65  tataacttgacaaagcactcagagcactaatgagctccatggaaaaagaagccaggacag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tataacttgacaaagcactcagagcactaatgagctccatggaaaaagaagccaggacag 324

                                                                       
Query: 125 ggatggtgaaaaggggataagagcaggaaccactgtgtggggctcagatactctgtgctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 325 ggatggtgaaaaggggataagagcaggaaccactgtgtggggctcagatactcggtgctt 384

                                                                       
Query: 185 gatattttgagaactggctttccttggatgtcaagatacaaggagaaaagtacctcttct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatattttgagaactggctttccttggatgtcaagatacaaggagaaaagtacctcttct 444

                                                                       
Query: 245 aattatctagaaaaaaaaattcagtgaagacttaaggacaactcaaagccataggggagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattatctagaaaaaaaaattcagtgaagacttaaggacaactcaaagccataggggagt 504

                                
Query: 305 ggaattgcaaacagttcataa 325
           |||||||||||||||||||||
Sbjct: 505 ggaattgcaaacagttcataa 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no232_j22.g1 MSMg01no232_j22.g1 CHROMAT_FILE:
MSMg01no232_j22.g1 PHD_FILE: MSMg01no232_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:09 2005
         (561 letters)



>mm_chrX_130207166_130208126
          Length = 961

 Score = 1069 bits (553), Expect = 0.0
 Identities = 559/561 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcataatttttgtttaaattgagtatttgggaagggagagaatggattctcagatgaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 727 cttcataatttttgtttaaattgagtatttgggaagggagagaatggattttcagatgaa 668

                                                                       
Query: 61  aggagactggcgggcggacagacaagtgttaggagcagccacatgagacttgtgcatatt 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 667 aggagactggcgggcggacagataagtgttaggagcagccacatgagacttgtgcatatt 608

                                                                       
Query: 121 tgagacttaaacagacaagaagtttggtgtcaggcctgtgtgcttcgtgagcctggcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tgagacttaaacagacaagaagtttggtgtcaggcctgtgtgcttcgtgagcctggcatt 548

                                                                       
Query: 181 agtggactagaccagagtttcttgatgtcagatgcttaagcaatgtcttcatgtgcatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agtggactagaccagagtttcttgatgtcagatgcttaagcaatgtcttcatgtgcatag 488

                                                                       
Query: 241 tcttctgatgctccattaagcctctgagtgccagggtggccagttttcagcttctcccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tcttctgatgctccattaagcctctgagtgccagggtggccagttttcagcttctcccac 428

                                                                       
Query: 301 tgggccccatctggttgttgttctgtggcaagctgctctccttcagcaccaccagtaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tgggccccatctggttgttgttctgtggcaagctgctctccttcagcaccaccagtaact 368

                                                                       
Query: 361 agccttggcggcctcacattttaagattgtttgctcctaaatctgatttccagagcatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agccttggcggcctcacattttaagattgtttgctcctaaatctgatttccagagcatga 308

                                                                       
Query: 421 agggcacctttttacggattgtactgtgttcttctggacaaaatggaatccttgtgtaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agggcacctttttacggattgtactgtgttcttctggacaaaatggaatccttgtgtaag 248

                                                                       
Query: 481 ctgggagggagaaaattttaatagaaatgttagatccttctttaccctgtgtgtgtgtgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ctgggagggagaaaattttaatagaaatgttagatccttctttaccctgtgtgtgtgtgt 188

                                
Query: 541 gtgtgtgtgtgtgtgtgtgtg 561
           |||||||||||||||||||||
Sbjct: 187 gtgtgtgtgtgtgtgtgtgtg 167


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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