TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATTTTAGTCCACGAAACAGGATTCTTAAATGCTTATTAGAAAAA
GTTCTGTCCCAAGGAGATTTTTTTATCCATGCAAAGTCCCTAAAATGAAT
TTTTAGAATTAGAAATCATCTTTACTTAAACATGGTATGGATAAAGCCAT
CATTCAGCAATTCATTAACCTGATTTTTTCATAGCTTCAAGAATAGGAGA
AGGAATAAAAAAATGGACACAATACAACATCTAAATTAACAAAATGTGAT
ATCTGTGTATTGGCTTCTAGGTTGCTAATTTTTCCACAGCAGACTGATGC
TCATTACCCATTAGTTTGTCAGTAAGAAAGCCAAATATTTACATATCCTA
TTGTTTTAGATATATCCTCAAGTAAACAAACATTTTTACATTTAGAGTCT
GCGTGCTTTGAAACTCCATCAAATACCACCCAAAATCTGCTAGCTGTAGA
TAAGCTTCCGGACTGTACAAACCCTCTGTGCTGTTGGTGCTCTTTACAGC
TCTCAAACCCAGACTCCACACTGGGCGGCTGGGCTGCCATCACTCACATA
TCCATCCTCTTCAATTGCATCCTTCCAGAGATTTCCTCTTCTGAGTGATG
ATGATACCCCATTCTCTAAGTAAGTCATATTGTAAGTCCACAAGCAAACT
GATATTCTGAATATTCTACTAT

TCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTATTTCTACCCTGACCAAG
TATCATTCAGCAGAAAGTTTTTTAGTTTTCAGGAGCATGTGGACTTTCTG
TTGTTTTGGTTGTTATTGACATCTAGCCTTATTCTGATGTTATCTGATAG
AATGCATGTGAGTATTCCCATTTTCTTGTATCAGTTGATGCTTGTTTTAT
AACCAATTATATTATCAGTTTTGGAGAATGTTCCATGAGGAGCTGAGAAG
AATGTATATTCATTTGTTTTGGGGTGAAATGTTCTATAGATATCTTTTAA
ATCCATTTGGTTCATAACTTCTGTTCATTTCACCGTGTCTCTGTTATTTT
CTATTTCAATGACCTGTCCATTGGTGAGAGTGGAGTGTTGAAGTCCCCCA
CTATAATTATGAGAAGTTCAATGTGTGTTTTGAGCTTTAGAAAAATTTCT
TTTATGGATGTGTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCAT
GACCAAGAAGCAAGTTGAGGAGAAAAAGGTTTATTCAGCTTACACTTCCA
TACTGCTGTTCATCATCGAGGAAGTCAGGACTGGAATTCAAGCAGGTCAG
AAAGCAGGAGCTGATACAGAGGCAATGGAAGGATGTTGCTTACTGGCTTG
CTTCCCCTGGCTTGGTCAGCCTGCTCTCTTA

Query= MSMg01no232_n21.b1 MSMg01no232_n21.b1 CHROMAT_FILE:
MSMg01no232_n21.b1 PHD_FILE: MSMg01no232_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:27 2005
         (677 letters)



>mm_chrX_4668821_4669897
          Length = 1077

 Score = 1168 bits (604), Expect = 0.0
 Identities = 658/676 (97%), Gaps = 4/676 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccattttagtccacgaaacaggattcttaaatgcttattagaaaaagttctgtcc 64
           |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattccattttagtccaggaaacaggatacttaaatgcttattagaaaaagttctgtcc 264

                                                                       
Query: 65  caaggagatttttttatccatgcaaagtccctaaaatgaatttttagaattagaaatcat 124
           |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 caaggagaattttttatccatgcaacgtccctaaaatgaatttttagaattagaaatcat 324

                                                                       
Query: 125 ctttacttaaacatggtatggataaagccatcattcagcaattcattaacctgatttttt 184
           ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 ctttaattaaacatggtatggataaagccatcatgcagcaattcattaacctgatttttt 384

                                                                       
Query: 185 catagcttcaagaataggagaaggaataaaaaaatggacacaatacaacatctaaattaa 244
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 catagcttcaagaataggagaaggaataaaataatggacacaatacaacatctaaattaa 444

                                                                       
Query: 245 caaaatgtgatatctgtgtattggcttctaggttgctaatttttccacagcagactgatg 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaaatgtgatatctgtgcattggcttctaggttgctaatttttccacagcagactgatg 504

                                                                       
Query: 305 ctcattacccattagtttgtcagtaagaaagccaaatatttacatatcctattgttttag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcattacccattagtttgtcagtaagaaagccaaatatttacatatcctattgttttag 564

                                                                       
Query: 365 atatatcctcaagtaaacaaacatttttacatttagagtctgcgtgctttgaaactccat 424
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atatagcctcaagtaaacaaacatttttacatttagagtctgcgtgctttgaaactccat 624

                                                                       
Query: 425 caaataccacccaaaatctgctagctgtagataagcttccggactgtacaaaccctctgt 484
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaataccacccaaagtctgctagctgtagataagcttccggactgtacaaaccctctgt 684

                                                                       
Query: 485 gctgttggtgctctttacagctctcaaacccag-act-ccacactgggcggctg-ggctg 541
           ||||||||||||||||||||||||||||||||| | | || ||||||||||||| |||||
Sbjct: 685 gctgttggtgctctttacagctctcaaacccaggatttcc-cactgggcggctgtggctg 743

                                                                       
Query: 542 ccatcactcacatatccatcctcttcaattgcatccttccagagatttcctcttctgagt 601
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 744 ccatcactcacatatccatcctcttcaactgcatccttccagagatttcctcttctgagt 803

                                                                       
Query: 602 gatgatgataccccattctctaagtaagtcatattgtaagtccacaagcaaactgatatt 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gatgatgataccccattctctaagtaagtcatattgtaagtccacaagcaaactgatatt 863

                           
Query: 662 ctgaatattctactat 677
           || |||||||| ||||
Sbjct: 864 ctaaatattctgctat 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)