BAC Information

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BAC

Clone NameMSMg01-234F16
ChromosomeX (Build37)
Map Location 15,727,632 - 15,727,950
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043949, LOC100043950, Cypt6, LOC100038939, LOC668993, Maoa, Maob, Ndph, LOC100043063, Efhc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234F16.T7 (MSMg01no234_f16.b1)MSMg01-234F16.TJ (MSMg01no234_f16.g1)
ACCAG400275AG400276
length747747
length of high quality
(start - end)
47 (46 - 92)314 (386 - 699)
definitionCHROMAT_FILE: MSMg01no234_f16.b1 PHD_FILE: MSMg01no234_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:19 2005CHROMAT_FILE: MSMg01no234_f16.g1 PHD_FILE: MSMg01no234_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAAGAACACTGAATGGGTGAGAAGCACCTGACAAAATGT
TCAACATCCTTAATCATCAGAGAAACGCAGATCACAACAACCCTGAGATT
CCATCTCACACCAGTCAGAATGGCTAAGATCAAAAGCCCAGGTGACATCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAATACTACTCCAATGATGGTGG
GATTGCAAGCTTGTACAACCACTCCTGAAAGCAGCCTGGCGGTTCCTCAG
AAAATTGGACCTAGGATTACCAGATTTATTTTTCGATATCTCTCCTGGGC
ATATATACAGAATATGNGTCGACTCCAAAGACAGANCCCTGGTCTATTAT
ATTCGTAGAAGCCTTATTTATAATAGCCAAAAACAAAAAAGAACCCGGAT
TTCCCTCAACAGACGAATGGATACAGAAAATGTGATACATTTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAA
ATGGTTGGACCTGGAGGACATTATCCTGAGTGAGGTAACCCTATCACAAA
AGAACTCGAATGATATGTACTCACTGATAAGTGGATATTAACCCAGAATC
TTATAATACCCAAGATATTAGTTACAATTTGCAAAACCCATGAGACTCCC
CAGGAACGAAGACCGAAGAATGGGCACTTTGCCCCTTCTTATAAATG
TCATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGGTGGGAATCTTGGAAAACAAG
TGTTGGCATTCAAATTATTGTTGTGCCAGGTATACAATAGGCTCAGTTAA
AGTTTAAAAATCTAAAGGATAATAGCAATACTTTAGTCTGTTGTGACTTT
AATTATTGATTATGAGAGAAAAAATCTAGTTTAGATATTTTTAATCATAG
AGGAAGAAATCCTAAACAACTATCAATGTTCCCTCTTGTTTTAGGAAATG
CCCTGCATGCTGAGTCTTTATTCATTGTTAGCATTAATCTATTCCAATTA
TATCTTTACTGAAATTAGTTTTACCATGGCACCCATCTTATGATAACATC
ATTTCAAAATCAGGGTTTAAATAATAAACACTTATGGAACACTTATTATA
GATCAGGAACCCAGGTCTAGGATTCAGTATTGAACAGAACAGTCAAAATT
TCAACCTTATACTCAGGTGATGGAAGAAAAACACTAGGCCAAAAAAAAAT
CTGATGGTGAAAGCTATGTATAAACATGCATATAGATAGAGATAAGAGAT
TTCATACAAGCTCTATTACATAAGGTAACTAAGGGAAAGATTGCTTGTAA
GATCCATTTGAGTAAACATCTGAATATAGGAATGTGTTCAGTCATTTGGA
GAACAGCAGAGAGGCAACTACAATTGGAGCACAGTAAGGTAAGTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_f16.g1 MSMg01no234_f16.g1 CHROMAT_FILE:
MSMg01no234_f16.g1 PHD_FILE: MSMg01no234_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:19 2005
         (314 letters)



>mm_chrX_15727432_15728150
          Length = 719

 Score =  563 bits (291), Expect = e-165
 Identities = 310/319 (97%), Gaps = 5/319 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttatgataacatcatttcaaaatcagggtttaaataataaacacttatggaacactta 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 tcttatgataacatcatttcaaaatcaggttttaaataataaacacttatggaacactta 260

                                                                       
Query: 61  ttatagatcaggaacccaggtctaggattcagtattgaacagaacagtcaaaatttcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatagatcaggaacccaggtctaggattcagtattgaacagaacagtcaaaatttcaac 320

                                                                       
Query: 121 cttatactcaggtgatggaagaaaaacactaggccaaaaaaaaa-----tctgatggtga 175
           ||||||||||||||||||||||||||||||| ||||||||||||     |||||||||||
Sbjct: 321 cttatactcaggtgatggaagaaaaacactaagccaaaaaaaaaaaaaatctgatggtga 380

                                                                       
Query: 176 aagctatgtataaacatgcatatagatagagataagagatttcatacaagctctattaca 235
           |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aagctatgtagaaacatgcatatagatagagataagagatttcagacaagctctattaca 440

                                                                       
Query: 236 taaggtaactaagggaaagattgcttgtaagatccatttgagtaaacatctgaatatagg 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaggtaactaagggaaagattgcttgtaagatccatttgagtaaacatctgaatatagg 500

                              
Query: 296 aatgtgttcagtcatttgg 314
           |||||||||||||||||||
Sbjct: 501 aatgtgttcagtcatttgg 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 719
Length adjustment: 9
Effective length of query: 305
Effective length of database: 710
Effective search space:   216550
Effective search space used:   216550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)