Query= MSMg01no235_k12.b1 MSMg01no235_k12.b1 CHROMAT_FILE:
MSMg01no235_k12.b1 PHD_FILE: MSMg01no235_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:02 2005
(638 letters)
>mm_chrX_128305079_128306116
Length = 1038
Score = 1189 bits (615), Expect = 0.0
Identities = 630/635 (99%), Gaps = 1/635 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgtaaggctattctaaaatgcttgttcttcttagatcagaaaatgttaagaaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ggaattctgtaaggctattctaaaatgcttgttcttcttagatcagaaaatgttaagaaa 597
Query: 64 taccaatagaggacaaaaaaaaagagcaaagttaaacatgtgattcccagatttccactc 123
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 taccaacagaggacaaaaaaaaagagcaaagttaaacatgtgattcccagatttccactc 537
Query: 124 tgctgttgtgtgtgggtaaaatgggtttcagtttcttgaaaaaaatgttggggcaaacac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tgctgttgtgtgtgggtaaaatgggtttcagtttcttgaaaaaaatgttggggcaaacac 477
Query: 184 ggcagaagtatttaaatgcatacatgtattcttaagtaaaataataataatggtaataac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ggcagaagtatttaaatgcatacatgtattcttaagtaaaataataataatggtaataac 417
Query: 244 tttaagtgcaattcttatgaaaagttttctcttttactaatgcttcctatctttttatta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tttaagtgcaattcttatgaaaagttttctcttttactaatgcttcctatctttttatta 357
Query: 304 cagagcatttgaggtgttgaaataacgagcagtttcccaactctgactgatccatgtgct 363
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 356 cagagcatttgaggtgttgaaataaggagcagtttcccaactctgactgatccatgtgct 297
Query: 364 gtcaaattgaaattatgaatgcagcagttcaaatctgtaatgcacagttttataaagggc 423
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gtcaaattggaattatgaatgcagcagttcaaatctgtaatgcacagttttataaagggc 237
Query: 424 tataatggacttaatttcctttttaatgttttatttatttttatattatgtgtctgaact 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tataatggacttaatttcctttttaatgttttatttatttttatattatgtgtctgaact 177
Query: 484 cgggcctgcatatgtgcatgtgtatggaatttatgcctagtaccataagacatcaaaagt 543
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 cgggcctg-atatgtgcatgtgtatggaatttatgcctagtaccataagacatcaaaagt 118
Query: 544 ggacatcatttacttggggactggagatatagatgtttcagttctattccatttatctac 603
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 ggacatcatttacttggagactggagatatagatgtttcagttctattccatttatctac 58
Query: 604 ttgcctgactctgtaccaataccacacagttttta 638
|||||||||||||||||||||||||||||||||||
Sbjct: 57 ttgcctgactctgtaccaataccacacagttttta 23
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_k12.g1 MSMg01no235_k12.g1 CHROMAT_FILE:
MSMg01no235_k12.g1 PHD_FILE: MSMg01no235_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:02 2005
(287 letters)
>mm_chrX_128269662_128270348
Length = 687
Score = 518 bits (268), Expect = e-151
Identities = 281/286 (98%), Gaps = 2/286 (0%)
Strand = Plus / Plus
Query: 1 tgtaataccattcacagatgtcttctaaaacaagaaaaaaaaagtataaaacaagaatga 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtaataccattcacagatatcttctaaaacaagaaaaaaaaagtataaaacaagaatga 260
Query: 61 ggattatcatgagatttggacaaatacctaggagttttacacatttcagaaactgctgta 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggattatgatgagatttggacaaatacctaggagttttacacatttcagaaactgctgta 320
Query: 121 aatatgagtgtgtaaagagaatctgtaagagaggtaccatgtatttaatttcaaaattaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatatgagtgtgtaaagagaatctgtaagagaggtaccatgtatttaatttcaaaattaa 380
Query: 181 gtggagacactttttgtttgtaccaaagagtacacgtgatgagacccatggctcaagcca 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 gtggagacacttt--gtttgtaccaaagagtacacgtgatgagacccatggctccagcca 438
Query: 241 catatatagcagaggatggccttgttggacatcaataggaagagaa 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 catatatagcagaggatggccttgttggacatcaataggaagagaa 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
