BAC Information

Click to search

BAC

Clone NameMSMg01-237A13
ChromosomeX (Build37)
Map Location 165,782,391 - 165,847,392
singlet/doubletdoublet
Overlap geneBC022960
Upstream geneFrmpd4, EG667822, EG637566, Msl31, Arhgap6, Amelx, Hccs, LOC100040950
Downstream geneMid1, 4933400A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237A13.T7 (MSMg01no237_a13.b1)MSMg01-237A13.TJ (MSMg01no237_a13.g1)
ACCAG402110AG402111
length738707
length of high quality
(start - end)		614 (123 - 736)478 (77 - 554)
definitionCHROMAT_FILE: MSMg01no237_a13.b1 PHD_FILE: MSMg01no237_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:45 2005CHROMAT_FILE: MSMg01no237_a13.g1 PHD_FILE: MSMg01no237_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,846,795 - 165,847,392)(165,782,391 - 165,782,868)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGAAGTTTCCAGTATAGAGTCACCATATGAATGGAGCAGGTCGCCT
GAAAGTGTGAATGTTATAGGCTCTTCCTCTATACTCTATCAACTTTGCTT
ACCTTATGTCTTTGGTATTCCTTGGAATTTCAAATATTAATGCCTACCTT
AATGTATTGAATCTAGCTTCATTTAAATGATCTCATAAGAACAAGATTTA
TAAGAAATTTCCTAAACAGTTTAGGAACTCTGACTTTGTGAAACTACATA
TAAGAGTATCCTAGAGAATTTGGGAACGAGAAAAGACTTCTCTGCTATTA
TAGGCATAGCAAATAGAGACAATTTAATCAAAGGCATAACCACTTACAAA
TCAACAAACAACTGGCACCGTGCATTTAGCTATGGAAGCTATAAATGGGT
CATGTAATTGTATTCACCCTTACCCATTATACACACCACTGATTATGTGT
TAATGTGTTTTGATTTTGTTTCAAAAACAAAATATACTGCCAGAATGCTC
TGGGTAAACAGATGCTTGGCCAAAATGATGAACAATGTCTTGGAGGAGAG
AAAGAAAACTTAAGCAAGATACAATAATATTTCCAACTTGAAAGCAAAAT
AATGCAAAAGATATAAAGCTGGTTAGATAAATAGAGAAGTTATACATACA
TACATACATACATACATACATACATACATACATACACA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGGAAAATGGAAATGTACTACT
GGAAGTTTTTATGCTATACAAGACCTTAATATCTTTTAGATTAGACTGGT
CACAAATGTAACATACAAATCTTAAAGCAACATGTTTTAGTTAATGTACC
AATTAAGGCAATAAAATAAAATTATAACAAATAACCAAAATGCTGGTGAA
AGAAAGACTAGAAGGGACATAACCAAGTCACACTAATAATTATATCTAAG
ATAAACAGACTACATGGTCCAACAAAAAGCAAAACCTTTATTATAAAAAT
TTCATTTTTTATTTTTATTTTTATCTTGACATGATTTTATTAAGTTAAAT
AAGTAAAAGCCTAGCTATATACCAATAAGTTTTGAAACAAGGGAATTAAA
CAGATACTTGAACACCCTGGTTCATTACACAATTCTTGAAGTATCAATAG
AAAAAAGTTACTCAATATTCATGGACAGATTGCACACAAAATATAGTTTT
GGTTTACAATACCCAGCAAACAGGAATGTGGATATGATACTTGGTTGAAA
GAGGATGAATCAAGAAAATAAGGCTAATTTAACTAAATCCTTGGAAGCAT
AAAAAAACAAGATTTTGAAAGGGGAATTTCCAACCCCCCTTTGGCCCCTA
TTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_a13.b1 MSMg01no237_a13.b1 CHROMAT_FILE:
MSMg01no237_a13.b1 PHD_FILE: MSMg01no237_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:45 2005
         (614 letters)



>mm_chrX_165846624_165847637
          Length = 1014

 Score = 1118 bits (578), Expect = 0.0
 Identities = 593/598 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcctctatactctatcaactttgcttaccttatgtctttggtattccttggaatttca 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 769 cttcctctatactctatcaactttacttaccttatgtctttggtattccttggaatttca 710

                                                                       
Query: 61  aatattaatgcctaccttaatgtattgaatctagcttcatttaaatgatctcataagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aatattaatgcctaccttaatgtattgaatctagcttcatttaaatgatctcataagaac 650

                                                                       
Query: 121 aagatttataagaaatttcctaaacagtttaggaactctgactttgtgaaactacatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aagatttataagaaatttcctaaacagtttaggaactctgactttgtgaaactacatata 590

                                                                       
Query: 181 agagtatcctagagaatttgggaacgagaaaagacttctctgctattataggcatagcaa 240
           |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 589 agagtatcctagagaatttgggaatgagaaaagacttctctactattataggcatagcaa 530

                                                                       
Query: 241 atagagacaatttaatcaaaggcataaccacttacaaatcaacaaacaactggcaccgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 atagagacaatttaatcaaaggcataaccacttacaaatcaacaaacaactggcaccgtg 470

                                                                       
Query: 301 catttagctatggaagctataaatgggtcatgtaattgtattcacccttacccattatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 catttagctatggaagctataaatgggtcatgtaattgtattcacccttacccattatac 410

                                                                       
Query: 361 acaccactgattatgtgttaatgtgttttgattttgtttcaaaaacaaaatatactgcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 acaccactgattatgtgttaatgtgttttgattttgtttcaaaaacaaaatatactgcca 350

                                                                       
Query: 421 gaatgctctgggtaaacagatgcttggccaaaatgatgaacaatgtcttggaggagagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gaatgctctgggtaaacagatgcttggccaaaatgatgaacaatgtcttggaggagagaa 290

                                                                       
Query: 481 agaaaacttaagcaagatacaataatatttccaacttgaaagcaaaataatgcaaaagat 540
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aaaaaacttaagcaagatacaataatatttccaacttgaaagcaaaataatgcaaaagat 230

                                                                     
Query: 541 ataaagctggttagataaatagagaagttatacatacatacatacatacatacataca 598
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 ataaaactggttagataaatagagaagttatacatacatacatacatacatacataca 172


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no237_a13.g1 MSMg01no237_a13.g1 CHROMAT_FILE:
MSMg01no237_a13.g1 PHD_FILE: MSMg01no237_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:45 2005
         (478 letters)



>mm_chrX_165782191_165783068
          Length = 878

 Score =  893 bits (462), Expect = 0.0
 Identities = 474/478 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagggaaaatggaaatgtactactggaagtttttatgctatacaagaccttaatatcttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 201 aagggaaaatggaaatgtactactggaagtttttatgctatacaagaaattaatatcttt 260

                                                                       
Query: 61  tagattagactggtcacaaatgtaacatacaaatcttaaagcaacatgttttagttaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagattagactggtcacaaatgtaacatacaaatcttaaagcaacatgttttagttaatg 320

                                                                       
Query: 121 taccaattaaggcaataaaataaaattataacaaataaccaaaatgctggtgaaagaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taccaattaaggcaataaaataaaattataacaaataaccaaaatgctggtgaaagaaag 380

                                                                       
Query: 181 actagaagggacataaccaagtcacactaataattatatctaagataaacagactacatg 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actagaagggacataaccaaatcacactaataattatatctaagataaacagactacatg 440

                                                                       
Query: 241 gtccaacaaaaagcaaaacctttattataaaaatttcattttttatttttatttttatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtccaacaaaaagcaaaacctttattataaaaatttcattttttatttttatttttatct 500

                                                                       
Query: 301 tgacatgattttattaagttaaataagtaaaagcctagctatataccaataagttttgaa 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatatgattttattaagttaaataagtaaaagcctagctatataccaataagttttgaa 560

                                                                       
Query: 361 acaagggaattaaacagatacttgaacaccctggttcattacacaattcttgaagtatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaagggaattaaacagatacttgaacaccctggttcattacacaattcttgaagtatca 620

                                                                     
Query: 421 atagaaaaaagttactcaatattcatggacagattgcacacaaaatatagttttggtt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atagaaaaaagttactcaatattcatggacagattgcacacaaaatatagttttggtt 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |