BAC Information

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BAC

Clone NameMSMg01-237C22
ChromosomeX (Build37)
Map Location 131,496,414 - 131,496,651
singlet/doubletsinglet
Overlap geneNxf2
Upstream geneSytl4, LOC665889, Cstf2, Nox1, Xkrx, Arl13a, 4732479N06Rik, LOC100040849, Tmem35, Cenpi, Drp2, Taf7l, LOC669370, LOC674122, Timm8a1, Btk, Rpl36a, Gla, Hnrph2, LOC665936, LOC665941, Armcx1, LOC100040933, LOC100040520, Armcx6, Armcx3, Armcx2, LOC637800, LOC100040987
Downstream geneB930008K04Rik, EG621246, LOC100040635, Tceal6, EG621322, Pramel3, EG621352, EG331529, EG621380, EG666040, EG666045, AV320801, EG621467, Nxf7, 4930534P07Rik, 1700008I05Rik, 1700129I15Rik, Gprasp1, Gprasp2, Bhlhb9
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237C22.T7 (MSMg01no237_c22.b1)MSMg01-237C22.TJ (MSMg01no237_c22.g1)
ACCAG402208AG402209
length761761
length of high quality
(start - end)
232 (440 - 671)238 (131 - 368)
definitionCHROMAT_FILE: MSMg01no237_c22.b1 PHD_FILE: MSMg01no237_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:56 2005CHROMAT_FILE: MSMg01no237_c22.g1 PHD_FILE: MSMg01no237_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATATCTGGTATTGCATACCTGGTCAAAAGCCTTAGGTTGAGGAAG
TTCTGGGATCTGTGGCGTATCCCCCTATTGTCATTCAATTAAATGGACAT
GGTATGCTTGTGAAAAATGCCTTATCCACATTTACGCTCATGTCCGTAGC
TTCGTGCTGCTGTCTGGTTTCTTTGGAGAAGTTTCTTTCTGACTTGGTAG
TAGTTACCAACGAGACTTATAACTGGTCAAAGTGTGGAGAGTAAGGGTTT
TTTGAGTTCTCTGCCATACATAGATTATGCACATTTTCCCCTCCGAGGTT
CCAGGGACATCTAGGATGAACTCATAGACAGAACGCAAGAGNCAAAAGAA
TGGGTGCGTGTTGGGGAACATTATCTATAATNGACNAAAAATGCCTGTTA
GACTCTTGTAACTCTCCTGTTGAGCTGTGATTACCTGCACAGGACTAGAC
CAGTCACCATTTCCTATAGAGAGAAGATGGGCTCCCAAGACACTTCTTGA
GGTTCTAGTTTTGCTTTCTATTAATGGTTGCTAAAGAGGGGCACACATTT
TCCTCAGTGGTGTAGCCACTAGTAAGTTGCCCATGCTCACTCGTGTTCCT
GTAAGTAACCCTAATTAAAGCCATTAATTCACTAATACCACCAAAGACAT
GAAAGGAGACAGAGGACTAGTTAAGAAGAGGAAAGGGACCATCAGGAGCG
GAATGAAAACT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGCCAACCAGGGTTAAATAGTG
AGAGAACCTGTCTAAAACATATTATACCAAATGAATATTGTATAAAGCAT
ATAAAATATGTAGTGTGTGCTATTTTATTAGTATGCAGCTTAAATAAATC
AGTTTCATTGTGCTCTTCTCTCAGGTCTTCCATGTTTGTTCAGAAGAACA
TTAATTCTGAGACATATAAACAACGATATGGTTTACCATACAAGAGATCT
GAGAGATTCTATCATTCAGGTAAAAGGACATTCCTATTATAACAATTTAT
AAATTGTTAGTAATATGGAATGTGATAAACGACCATTTTCTCAAATGTAT
GTGTATTTAGTGTTGTTGATACAGTATAGTGGTTTTCAAAAACATTAAAT
TTCATTTTACTTGGTCTTATTCTTTCAGCTAAAAGTTCATTAATTAAAAA
ATCAACAGTAAACAGTTTTTGGTTTTTTTTTTTTTTTGGCTTTTTGAGAA
AAGGTTTCTCTGTATAGCCCTTGCTGTCCTGGAACTCACTTTGTAGACCA
GGCTGACCTCGAACTCAGAAATCTGCCTGCCTCTACCTCCCGAGTGATGG
GATTAAAGGCGTGCGCCACCACGCCCGGTAACAGTTATTTTTTAATTAAA
ATTTTATCATATGGCCAAAGTACTATTAGCAATGTCTTGTTTTTTACATT
TGCTCTAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_c22.g1 MSMg01no237_c22.g1 CHROMAT_FILE:
MSMg01no237_c22.g1 PHD_FILE: MSMg01no237_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:56 2005
         (238 letters)



>mm_chrX_131496214_131496851
          Length = 638

 Score =  453 bits (234), Expect = e-132
 Identities = 237/238 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaatattgtataaagcatataaaatatgtagtgtgtgctattttattagtatgcagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atgaatattgtataaagcatataaaatatgtagtgtgtgctattttattagtatgcagct 379

                                                                       
Query: 61  taaataaatcagtttcattgtgctcttctctcaggtcttccatgtttgttcagaagaaca 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 taaataaattagtttcattgtgctcttctctcaggtcttccatgtttgttcagaagaaca 319

                                                                       
Query: 121 ttaattctgagacatataaacaacgatatggtttaccatacaagagatctgagagattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttaattctgagacatataaacaacgatatggtttaccatacaagagatctgagagattct 259

                                                                     
Query: 181 atcattcaggtaaaaggacattcctattataacaatttataaattgttagtaatatgg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atcattcaggtaaaaggacattcctattataacaatttataaattgttagtaatatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)