BAC Information

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BAC

Clone NameMSMg01-237E20
ChromosomeX (Build37)
Map Location 34,277,144 - 34,277,457
singlet/doubletsinglet
Overlap genenone
Upstream geneEG210457, Dock11, Il13ra1, Zcchc12, LOC547166, Lonrf3, EG621901, Pgrmc1, B230333C21Rik, LOC621983
Downstream geneSlc25a43, Slc25a5, C330007P06Rik, Ube2a, Nkrf, Sept6, Ankrd58, Rpl39, Upf3b, 2610020O08Rik, Akap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237E20.T7 (MSMg01no237_e20.b1)MSMg01-237E20.TJ (MSMg01no237_e20.g1)
ACCAG402288AG402289
length747756
length of high quality
(start - end)
320 (36 - 355)352 (385 - 736)
definitionCHROMAT_FILE: MSMg01no237_e20.b1 PHD_FILE: MSMg01no237_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:06 2005CHROMAT_FILE: MSMg01no237_e20.g1 PHD_FILE: MSMg01no237_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAACTA
TAGGACCAATGATCTAGAGATAATAGTGGCTTGCTTATTTGTCAATCTAC
TGGCTGATGTACTCCATTTTTTACTTACATTTATTAATTGGAGGGAGCAC
ATATAGGTGTAGGTCAGGAAACAACTCAAGGAAGTCTATTCCCTTATTCC
ATCCTGGGGATCAAACTCTGGTCAACAGGCTTGGTGGCAAGTGCCTTTGC
CTGCTGAGCCATCTCACCAGCTCTATTGGTTGATGTATTTGGGAGCATGG
CAGCAAGAAGGATAGTATGTTGCCAGAGCAGTATCTGAGAGCTCACATCT
TGATATTTTCACCCTCGCACCCCCAGGGAGCTAACTGAGAATGGAAAAAC
CTGCCCTGACCAATACACCTCCTCCAATGAGGCCACACCTCCTCATCCTT
CCCAAAGAGTTTCACCACCAGGGAAACCAAATATTCAAATATATGAGCCT
AAGGTGGGGGGCATCCTCATTCAAAGCACCACTGAGGGTAGTGTAAGACT
TGACCTCCCCCCATAGAGTCAAGAGCATAAATAGGATCTGGTGCCCATGG
AGACAAACTAGATGAATGACAATGATGGTTAATCTTGATTGTCAACTTGA
CAGGATCTAGAATCAACTAAGAGAAATGCTTCTGGGTATTTATTTATTTA
TTCACTTATTTATTATTTTATTTACCTGGCTCCGCTTTCTTTTTTCN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTGATCATTTTAGGAATCGTTT
GGGTGCCTGTCCTGCCTATTCAGGCCACCAGGTTCAAGTGGATGTGACCT
TTAGGCCCAGTAGCTGACACATAGCAAATGCTATTTTCATGACAGCCTCT
CTTTGAAGGTCAGGCCATGAACTTAGACTCACAGTTATAGGCAGCTGGGA
GCAACCTGAACAAACAAGTAGGAGGGAGAAACTGCCATTAAGGAGGCCCC
GCTCCTTATTCCACTGCAGAGCCAGGGTCCAACAATGCCTGCATTATCGC
TTTTATAAGTGTTCTCTCCAACACCACCCCCCATATGGAGTGGCTGGCGG
CACACACCTGTAATATCACCACCCAAGAGGCTAAAGCAGAAAGATCACTA
AGTCTGAAGCCAATATGAGCTACATACAAAATTTGAGGACCGTCTGGGAT
ATAGAGTGAAACTCTTGTCTCTAAAACCAACAACAAAGTAGGTATATTTG
CTGCTCTTGCAGAGACTAGGGTTCAGTTCTCAGCATTCATATGAAAGGAC
TCCTAACCACTTGTAACTACAAGTCTAGAAGATGTAGTATCCTCTTCCAC
CCTCCAAGGGCAACGCCCAACATGTACATACACAGACATGCATACATACT
TCCATAAGTCAAACTACGTCTTTTTAACAATACACCAAGTTGGCCTGGAG
GTGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_e20.b1 MSMg01no237_e20.b1 CHROMAT_FILE:
MSMg01no237_e20.b1 PHD_FILE: MSMg01no237_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:06 2005
         (320 letters)



>mm_chrX_34276940_34277659
          Length = 720

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaactataggaccaatgatctagagataatagtggcttgcttatttgtcaatcta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaactataggaccaatgatctagagataatagtggcttgcttatttgtcaatcta 264

                                                                       
Query: 65  ctggctgatgtactccattttttacttacatttattaattggagggagcacatataggtg 124
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctggctgatgtactttattttttacttacatttattaattggagggagcacatataggtg 324

                                                                       
Query: 125 taggtcaggaaacaactcaaggaagtctattcccttattccatcctggggatcaaactct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taggtcaggaaacaactcaaggaagtctattcccttattccatcctggggatcaaactct 384

                                                                       
Query: 185 ggtcaacaggcttggtggcaagtgcctttgcctgctgagccatctcaccagctctattgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtcaacaggcttggtggcaagtgcctttgcctgctgagccatctcaccagctctattgg 444

                                                                       
Query: 245 ttgatgtatttgggagcatggcagcaagaaggatagtatgttgccagagcagtatctgag 304
           ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 445 ttgatgtatttgggagcatggcagcaagaaggaaagcatgttgccagagcagtatctgag 504

                         
Query: 305 agctcacatcttga 318
           ||||||||||||||
Sbjct: 505 agctcacatcttga 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)