BAC Information

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BAC

Clone NameMSMg01-237J19
ChromosomeX (Build37)
Map Location 110,476,848 - 110,566,569
singlet/doubletdoublet
Overlap geneDach2
Upstream geneApool, Satl1, EG623341, 2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428, LOC100039112, Chm, EG664918
Downstream geneLOC237016, EG664945, EG634881, LOC100039201
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237J19.T7 (MSMg01no237_j19.b1)MSMg01-237J19.TJ (MSMg01no237_j19.g1)
ACCAG402512AG402513
length685698
length of high quality
(start - end)		617 (65 - 681)622 (77 - 698)
definitionCHROMAT_FILE: MSMg01no237_j19.b1 PHD_FILE: MSMg01no237_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:29 2005CHROMAT_FILE: MSMg01no237_j19.g1 PHD_FILE: MSMg01no237_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,565,954 - 110,566,569)(110,476,848 - 110,477,469)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATTCCACAG
TCTCCATGTAGGTATGCACTTCAATTACCATCCTATTATTTTACACAAAT
GTTACTTATACCTTTTATGGCACTGACTCTCATTCAATCTCCATCCACTT
TTGACTTTTCTCTAACTTCTACTTTCAGTCACATGAAGGGCATTTGTTAC
TTTGTACTCTATCACTATTCTGTGCAATCTTATGATCCAATCCCAATTCA
TAAATATAAATGATCACTAATAGGAAATAGTGAAATCATGGAAACCCCAA
TTGACAAGAAACGTCATATGGATAGATCGGTTCTAATTAACCATCCGGAT
TTCACTTTTTTTTATCAGTAAGCAAAATTACAGGCTTGATGCTGAGATTT
TTAATGGCTTCCCTTTCCTGTCTTCACAAGTATAATATAGAGAACAAGAT
TATGGAAATTGGGCTGAATCTGTAAAGGCTCCAAGACATTCCCAGGGAGT
TGATTTTTAAAAAATAAATACATAAATACCTGTTAACAGCTTGTTTCCTT
GTCATTTGCCTCTTCCTTCTAAAAGGAGAGTGTAGCAAAAAATAAATAAA
TAAAACTGGTTAATTGAGAATTTTAGTTAGTCAGATTCCAATTATTCAAG
GCTTTATTATTTTCACAAAATATCTCTTAAATTGT

CGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGAAACTTTGCATTCTGGTGCT
AAAAAATAACCTTGCATAATTATCTGTATTAAATAAGTGTATGTTCCTTT
TGTATGTTTATATAGTAAAGAGCACACCCTTTAAACTTTCCATCATTTAT
TTGATGTCAGATGAAAGAAATTCCTATTTTTCTTGTATTTGAAAATAGAG
TTGGGAGATGTCTTTATAATGAGGAGCTTGCTATCAGTTCATAGATCATC
CTGACAACTTTTGTTTTCCAGGAAAGGTGCAAACTATAAGGGACATCACA
GTTTGTCTCTCTGCCAAAGGGACATATAGACCTTGGAGAAATAGCCCTTT
GCTGTTCATTTGACTGTTGAAGTTGTAGTTATTTATTGTCTTTTGTGTAC
ACATTCTAAAGTATTGAATGTCAGACTGATGTTCCCATTTTGACATGCCT
AGAAGTAAGGCCTTGAAAGAAGTGCATTCCTTTGCAGCTTGTATGTCTTC
ATGACACAGAAAGGTGGTTCTTCATTTATCAAGTGCATTTTCTTTGAAAT
TCTACTTGTGGACCTTTCTTGACTAGTCTCTTTCCTGAATTTGGAATGCC
ATTTCTGTTTTGCATTTGGGCTATTGACCTGATCTTTGCTCTTTCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_j19.b1 MSMg01no237_j19.b1 CHROMAT_FILE:
MSMg01no237_j19.b1 PHD_FILE: MSMg01no237_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:29 2005
         (617 letters)



>mm_chrX_110565753_110566769
          Length = 1017

 Score = 1168 bits (604), Expect = 0.0
 Identities = 613/616 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   gcacttcaattaccatcctattattttacacaaatgttacttataccttttatggcactg 61
           ||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||
Sbjct: 817 gcacttcaattaccatcctattattttacacaaatgttacacatacattttatggcactg 758

                                                                       
Query: 62  actctcattcaatctccatccacttttgacttttctctaacttctactttcagtcacatg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 actctcattcaatctccatccacttttgacttttctctaacttctactttcagtcacatg 698

                                                                       
Query: 122 aagggcatttgttactttgtactctatcactattctgtgcaatcttatgatccaatccca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aagggcatttgttactttgtactctatcactattctgtgcaatcttatgatccaatccca 638

                                                                       
Query: 182 attcataaatataaatgatcactaataggaaatagtgaaatcatggaaaccccaattgac 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 attcataaatataaatgatcactaataggaaatagtgaaatcatggaaaccccaattgac 578

                                                                       
Query: 242 aagaaacgtcatatggatagatcggttctaattaaccatccggatttcacttttttttat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aagaaacgtcatatggatagatcggttctaattaaccatccggatttcacttttttttat 518

                                                                       
Query: 302 cagtaagcaaaattacaggcttgatgctgagatttttaatggcttccctttcctgtcttc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cagtaagcaaaattacaggcttgatgctgagatttttaatggcttccctttcctgtcttc 458

                                                                       
Query: 362 acaagtataatatagagaacaagattatggaaattgggctgaatctgtaaaggctccaag 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 acaagtataatatagagaacaagattatggaaattgggctgaatctgtaaaggctccaag 398

                                                                       
Query: 422 acattcccagggagttgatttttaaaaaataaatacataaatacctgttaacagcttgtt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 acattcccagggagttgatttttaaaaaataaatacataaatacctgttaacagcttgtt 338

                                                                       
Query: 482 tccttgtcatttgcctcttccttctaaaaggagagtgtagcaaaaaataaataaataaaa 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tccttgtcatttgcctcttccttctaaaaggagagtgtagcaaaaaataaataaataaaa 278

                                                                       
Query: 542 ctggttaattgagaattttagttagtcagattccaattattcaaggctttattattttca 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctggttaattgagaattttagttagtcagattccaattattcaaggctttattattttca 218

                           
Query: 602 caaaatatctcttaaa 617
           ||||||||||||||||
Sbjct: 217 caaaatatctcttaaa 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no237_j19.g1 MSMg01no237_j19.g1 CHROMAT_FILE:
MSMg01no237_j19.g1 PHD_FILE: MSMg01no237_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:29 2005
         (622 letters)



>mm_chrX_110476648_110477669
          Length = 1022

 Score = 1180 bits (610), Expect = 0.0
 Identities = 619/622 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggaaactttgcattctggtgctaaaaaataaccttgcataattatctgtattaaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggaaactttgcattctggtgctaaaaaataaccttgcataattatctgtattaaataa 260

                                                                       
Query: 61  gtgtatgttccttttgtatgtttatatagtaaagagcacaccctttaaactttccatcat 120
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtatgttccttttgtatgtttacatagtaaagagcacaccctttaaactttccatcat 320

                                                                       
Query: 121 ttatttgatgtcagatgaaagaaattcctatttttcttgtatttgaaaatagagttggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatttgatgtcagatgaaagaaattcctatttttcttgtatttgaaaatagagttggga 380

                                                                       
Query: 181 gatgtctttataatgaggagcttgctatcagttcatagatcatcctgacaacttttgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgtctttataatgaggagcttgctatcagttcatagatcatcctgacaacttttgttt 440

                                                                       
Query: 241 tccaggaaaggtgcaaactataagggacatcacagtttgtctctctgccaaagggacata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccaggaaaggtgcaaactataagggacatcacagtttgtctctctgccaaagggacata 500

                                                                       
Query: 301 tagaccttggagaaatagccctttgctgttcatttgactgttgaagttgtagttatttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagaccttggagaaatagccctttgctgttcatttgactgttgaagttgtagttatttat 560

                                                                       
Query: 361 tgtcttttgtgtacacattctaaagtattgaatgtcagactgatgttcccattttgacat 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 tgtcttttgtgtacacattctaaagtattgaatgtcagactgatgttcacattttgacat 620

                                                                       
Query: 421 gcctagaagtaaggccttgaaagaagtgcattcctttgcagcttgtatgtcttcatgaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcctagaagtaaggccttgaaagaagtgcattcctttgcagcttgtatgtcttcatgaca 680

                                                                       
Query: 481 cagaaaggtggttcttcatttatcaagtgcattttctttgaaattctacttgtggacctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagaaaggtggttcttcatttatcaagtgcattttctttgaaattctacttgtggacctt 740

                                                                       
Query: 541 tcttgactagtctctttcctgaatttggaatgccatttctgttttgcatttgggctattg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcttgactagtctctttcctgaatttggaatgccatttctgttttgcatttgggctattg 800

                                 
Query: 601 acctgatctttgctctttccag 622
           ||||||||||||||||||||||
Sbjct: 801 acctgatctttgctctttccag 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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