BAC Information

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BAC

Clone NameMSMg01-260C05
ChromosomeX (Build37)
Map Location 137,824,163 - 137,824,480
singlet/doubletsinglet
Overlap geneCol4a6
Upstream geneEG245643, LOC666424, Prps1, Tsc22d3, Mid2, LOC619612, Tex13, LOC632685, Vsig1, Psmd10, Atg4a, LOC100038961
Downstream geneCol4a5, Irs4, LOC633596, EG666488, LOC622901, EG436234, EG622956, Gucy2f, LOC623006, LOC100039023, Nxt2, EG434858, Kcne1l, Acsl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260C05.T7 (MSMg01no260_c05.b1)MSMg01-260C05.TJ (MSMg01no260_c05.g1)
ACCAG402884AG402885
length801769
length of high quality
(start - end)
318 (69 - 386)363 (88 - 450)
definitionCHROMAT_FILE: MSMg01no260_c05.b1 PHD_FILE: MSMg01no260_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:08 2005CHROMAT_FILE: MSMg01no260_c05.g1 PHD_FILE: MSMg01no260_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGAATCCGCGGAAT
TCCCATCTAGGTACCCTGATACTATAGGCAAAGCAAGACCATTGAAGCTG
TATGGTCAAGGCAGCAAGAAATAAGCACACCATTGCGCCTAAATAGAAAG
GGAGGGACATCTCTAATGCACAAGATGAAGTTCAAGAACTATGTTTAATG
TGACTACAACCTAGCAGAACCCCTGTGCCAACAGCAAAGCGCTCACCTCA
AAAATAGGCATACACCTTGTCAGGAAGTAAGGAGTCAATGAGCTTGGTGA
AGAATGTCCTCTGAGGAGGAATTATCCACAAAGAGTCAGTCCCATCCATG
CTTCATAGACTATTTCTCTTCAGCTTTACCACCTGTTGAAGGTACAAACT
TGGACACACAGTGACGGCCCCACGTTGTCCTTGATAGCCATAGGATAAGC
TTTTGAAACATCAACTGGAGCAAAAATATGACTTTAAATATTCCAGCAAA
TACAATTTTATTTGGAGAGGATTATGAAATAAGTCTGGATTTTCAGAAAA
AGCAGAAGCATGAATACTTAGTTGATGATGGGTGCTTTTTGGCTTAAATA
CTGATTTACTTCATAGGGTTGCATGCTTTACTGCATTGGCTGTGTAATGC
AAGTTCTTTTTAACATGTTTATGTAATTTTTGTCGTGTTGTATAGACTTG
GCTTGAAATTTTCTTGTAAATCTTCTTGATTTCCCATGTAACACTTGTGA
TGTTATCTCCTCATCTTCTCCTTATATTATCTTATTATACTCATCTACCA
A
CTCCTATTCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGAATGACCA
ACAGAGTCAACTAACCTGGACCCTTGGGGCTCTCAGAGAATGAGCCACCA
ACCAAAAAATATACATGGGCTGGACCTAGTCCTCCCTGCATATATGTAGC
AGATGTGCTGTATGGTCTTCATGTGGGTCCCAAACAACTAGAGTGGGGGC
TATCCCAAAAGCTGTTGTCTGTCCATGGGATATGTTCTTCTAGCTAGGCT
ACCTTGTCTGGTCTCAGTGGGAAAGGAAGCACCTAGCCTTTCAGATACTT
TAAGTGCCAGGGTGGGGGCATATCCAAGGGTACCCCACCTGGTCAGAGGA
GAAGAGGAGGGGGGCATGGGGGAAGGACTGCCCCCAGGGGTTGACTGAGA
GGTGGCCAGTGAGTACAACATAACGTGACATAATACTATATCATTAATTA
CTTCACCCTCTCCCTTATTTTCCGAATTCACTACCCTTTTTCATCCCTTG
ATATTCCTCCTATTTCTTAATTATGTCTCCCATCACTTTATCCACCTTCG
TTCTTTCTTCGGTTCCCCTTCTCTTCCCCTTTTTAACTTTTCTTTTTCCT
CTCTTTTCCCCCCTATCTTCCGTTCTCTGATTAATTCCCCCTGTTTTAAC
ACCCTTCTGTTTTTTCCTCGCTCTATTTTTCCTACTCCATTTCCTCTCCA
CTATTCCCCTCTTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_c05.b1 MSMg01no260_c05.b1 CHROMAT_FILE:
MSMg01no260_c05.b1 PHD_FILE: MSMg01no260_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:08 2005
         (318 letters)



>mm_chrX_137823963_137824680
          Length = 718

 Score =  600 bits (310), Expect = e-176
 Identities = 316/318 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atactataggcaaagcaagaccattgaagctgtatggtcaaggcagcaagaaataagcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atactataggcaaagcaagaccattgaagctgtatggtcaaggcagcaagaaataagcac 260

                                                                       
Query: 61  accattgcgcctaaatagaaagggagggacatctctaatgcacaagatgaagttcaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accattgcgcctaaatagaaagggagggacatctctaatgcacaagatgaagttcaagaa 320

                                                                       
Query: 121 ctatgtttaatgtgactacaacctagcagaacccctgtgccaacagcaaagcgctcacct 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ctatgtttaatgtgactacaacctagcagtacccctgtgccaacagcaaagcgctcacct 380

                                                                       
Query: 181 caaaaataggcatacaccttgtcaggaagtaaggagtcaatgagcttggtgaagaatgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaaataggcatacaccttgtcaggaagtaaggagtcaatgagcttggtgaagaatgtc 440

                                                                       
Query: 241 ctctgaggaggaattatccacaaagagtcagtcccatccatgcttcatagactatttctc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 ctctgaggaggaattatccacaaagagtcagtcccatccatgcttcatagactacttctc 500

                             
Query: 301 ttcagctttaccacctgt 318
           ||||||||||||||||||
Sbjct: 501 ttcagctttaccacctgt 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)