Query= MSMg01no260_j22.b1 MSMg01no260_j22.b1 CHROMAT_FILE:
MSMg01no260_j22.b1 PHD_FILE: MSMg01no260_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:46 2005
(682 letters)
>mm_chrX_84290978_84292059
Length = 1082
Score = 1052 bits (544), Expect = 0.0
Identities = 568/576 (98%)
Strand = Plus / Minus
Query: 5 gaattctcatgagtggccatgcttatatataccttgcaataagttctgcaaacatgtatt 64
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 576 gaattctcatgagtggtcatgcttatatacaccttgcaataagttctgcaaacatgtatt 517
Query: 65 tcttaggaattgggcaaaacttgaaaaaacttgaatcaaaaagaaattagttcataatag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tcttaggaattgggcaaaacttgaaaaaacttgaatcaaaaagaaattagttcataatag 457
Query: 125 tagtttgatgtatgtagtgaatataccaaactgaaaataatattatgctaattacatttt 184
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 456 tagtttgatgtatgtagtgaatataccaaactgaaaataatattatgctgattacatttt 397
Query: 185 tcataatatattatcaaaatgtgagcaagtcatctctgataaactgatagatatgaacat 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tcataatatattatcaagatgtgagcaagtcatctctgataaactgatagatatgaacat 337
Query: 245 gagatcatgaacacaatatatttgcaataaatattaaattctatactcattggaatttta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gagatcatgaacacaatatatttgcaataaatattaaattctatactcattggaatttta 277
Query: 305 ttatgtttatattggagtaagcatgatatttttgtctaatttgggtacatatagttatat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttatgtttatattggagtaagcatgatatttttgtctaatttgggtacatatagttatat 217
Query: 365 caaatctcttaaccaaaatatataaaatatattatattttttacatattaaatttacttc 424
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 216 caaatctcttaatcaaaatatataaaatatattatattttttacattttaaatttacttc 157
Query: 425 aaatattctatgatgatagagagataggtagatgacaggcataaaacaaagttctttaaa 484
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aaatattctgtgatgatagagagataggtagatgacaggcataaaacaaagttctttaaa 97
Query: 485 atgtatttgcttttagtgattaagtaaaatatgttgaaacacatatttcaatatgcattc 544
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 96 atgtatttgcttttagtgattaagtaaaatatgttgaaacacatacttcaatatgcattc 37
Query: 545 attctgatcaggaacttcctacattaatcatttaaa 580
||||||||||||||||||||||||||||||||||||
Sbjct: 36 attctgatcaggaacttcctacattaatcatttaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_j22.g1 MSMg01no260_j22.g1 CHROMAT_FILE:
MSMg01no260_j22.g1 PHD_FILE: MSMg01no260_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:46 2005
(659 letters)
>mm_chrX_84203105_84204163
Length = 1059
Score = 1228 bits (635), Expect = 0.0
Identities = 657/671 (97%), Gaps = 12/671 (1%)
Strand = Plus / Plus
Query: 1 ttttagttagattcaaggagtaatttttcaaaagaggtacatttcatggaaatgtttttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttttagttagattcaaggagtaatttttcaaaagaggtacatttcatggaaatgtttttg 248
Query: 61 ataattttttttcctttcataaaatacgaaactatttgtcctaggagacagctagtaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ataattttttttcctttcataaaatacgaaactatttgtcctaggagacagctagtaaca 308
Query: 121 ataggaagagacatttgcttgctttaaggggcagggttagcatttataatttcacaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ataggaagagacatttgcttgctttaaggggcagggttagcatttataatttcacaggag 368
Query: 181 cctcgtttctcttttgtattgccactgcacactgccttgcatttaaatgcaatgattgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cctcgtttctcttttgtattgccactgcacactgccttgcatttaaatgcaatgattgca 428
Query: 241 tcccaagtaattgttttgaccatttgaaacgtcatttttccaaagttctgagagatttag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tcccaagtaattgttttgaccatttgaaacgtcatttttccaaagttctgagagatttag 488
Query: 301 tcaatttcaatttgctcttctaattagttatatctttagattgcccatagatttgccatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tcaatttcaatttgctcttctaattagttatatctttagattgcccatagatttgccatc 548
Query: 361 aactctctattatcgagtcaagggaaagaaaaacagaaatgtgtcttcctgaaagcaatg 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 549 aactctctattatcgagtcaagggaaagaaaaacggaaatgtgtcttcctgaaagcaatg 608
Query: 421 ttttcctgctcaaatattatagacaggggatgattccattctctcgagtgcctaacaaac 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 609 ttttcctgctcaaatattatagacaggggatgattccattctctcgagagcctaacaaac 668
Query: 481 tttccacgtgaaactgtttgagatctagaagtgaggata-----------ctttaaaata 529
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 669 tttccacgtgaaactgtttgagatctagaagtgaggataggaatctgctactttaaaata 728
Query: 530 attataataaaaaaaaacc-ttagcttgttagatactgtgcttactactgaactgtgaaa 588
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 attataataaaaaaaaacccttagcttgttagatactgtgcttactactgaactgtgaaa 788
Query: 589 atgtagtgagacggtgtacatgaaatgaacaacataaaattgacaattgaaataaacaac 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 atgtagtgagacggtgtacatgaaatgaacaacataaaattgacaattgaaataaacaac 848
Query: 649 ttttgactgtg 659
|||||||||||
Sbjct: 849 ttttgactgtg 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|