BAC Information

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BAC

Clone NameMSMg01-260J22
ChromosomeX (Build37)
Map Location 84,203,293 - 84,291,553
singlet/doubletdoublet
Overlap geneIl1rapl1
Upstream gene1700072E05Rik, Nr0b1, CN716893, LOC667841, LOC236427, EG667852, EG436212, Gm41, EG629374, EG637027
Downstream geneLOC667876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260J22.T7 (MSMg01no260_j22.b1)MSMg01-260J22.TJ (MSMg01no260_j22.g1)
ACCAG403233AG403234
length731739
length of high quality
(start - end)
682 (50 - 731)659 (79 - 737)
definitionCHROMAT_FILE: MSMg01no260_j22.b1 PHD_FILE: MSMg01no260_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:46 2005CHROMAT_FILE: MSMg01no260_j22.g1 PHD_FILE: MSMg01no260_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,290,978 - 84,291,553)(84,203,293 - 84,203,963)
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCATGAGTGGCCATGCTTATATATACCTTGCAATAAGTTCT
GCAAACATGTATTTCTTAGGAATTGGGCAAAACTTGAAAAAACTTGAATC
AAAAAGAAATTAGTTCATAATAGTAGTTTGATGTATGTAGTGAATATACC
AAACTGAAAATAATATTATGCTAATTACATTTTTCATAATATATTATCAA
AATGTGAGCAAGTCATCTCTGATAAACTGATAGATATGAACATGAGATCA
TGAACACAATATATTTGCAATAAATATTAAATTCTATACTCATTGGAATT
TTATTATGTTTATATTGGAGTAAGCATGATATTTTTGTCTAATTTGGGTA
CATATAGTTATATCAAATCTCTTAACCAAAATATATAAAATATATTATAT
TTTTTACATATTAAATTTACTTCAAATATTCTATGATGATAGAGAGATAG
GTAGATGACAGGCATAAAACAAAGTTCTTTAAAATGTATTTGCTTTTAGT
GATTAAGTAAAATATGTTGAAACACATATTTCAATATGCATTCATTCTGA
TCAGGAACTTCCTACATTAATCATTTAAATATGAAAATGCACGTAGTTTT
AAAAACTAAAAAGAATCTATTTTCCACGTACCTATTAATTCTTAAGTCTG
AATTTAGAAAAAAGCGTGAATCCGTTTTCTA
ACCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAGTTAGATTCAAGGAGTA
ATTTTTCAAAAGAGGTACATTTCATGGAAATGTTTTTGATAATTTTTTTT
CCTTTCATAAAATACGAAACTATTTGTCCTAGGAGACAGCTAGTAACAAT
AGGAAGAGACATTTGCTTGCTTTAAGGGGCAGGGTTAGCATTTATAATTT
CACAGGAGCCTCGTTTCTCTTTTGTATTGCCACTGCACACTGCCTTGCAT
TTAAATGCAATGATTGCATCCCAAGTAATTGTTTTGACCATTTGAAACGT
CATTTTTCCAAAGTTCTGAGAGATTTAGTCAATTTCAATTTGCTCTTCTA
ATTAGTTATATCTTTAGATTGCCCATAGATTTGCCATCAACTCTCTATTA
TCGAGTCAAGGGAAAGAAAAACAGAAATGTGTCTTCCTGAAAGCAATGTT
TTCCTGCTCAAATATTATAGACAGGGGATGATTCCATTCTCTCGAGTGCC
TAACAAACTTTCCACGTGAAACTGTTTGAGATCTAGAAGTGAGGATACTT
TAAAATAATTATAATAAAAAAAAACCTTAGCTTGTTAGATACTGTGCTTA
CTACTGAACTGTGAAAATGTAGTGAGACGGTGTACATGAAATGAACAACA
TAAAATTGACAATTGAAATAAACAACTTTTGACTGTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_j22.b1 MSMg01no260_j22.b1 CHROMAT_FILE:
MSMg01no260_j22.b1 PHD_FILE: MSMg01no260_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:46 2005
         (682 letters)



>mm_chrX_84290978_84292059
          Length = 1082

 Score = 1052 bits (544), Expect = 0.0
 Identities = 568/576 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcatgagtggccatgcttatatataccttgcaataagttctgcaaacatgtatt 64
           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 576 gaattctcatgagtggtcatgcttatatacaccttgcaataagttctgcaaacatgtatt 517

                                                                       
Query: 65  tcttaggaattgggcaaaacttgaaaaaacttgaatcaaaaagaaattagttcataatag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tcttaggaattgggcaaaacttgaaaaaacttgaatcaaaaagaaattagttcataatag 457

                                                                       
Query: 125 tagtttgatgtatgtagtgaatataccaaactgaaaataatattatgctaattacatttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 456 tagtttgatgtatgtagtgaatataccaaactgaaaataatattatgctgattacatttt 397

                                                                       
Query: 185 tcataatatattatcaaaatgtgagcaagtcatctctgataaactgatagatatgaacat 244
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tcataatatattatcaagatgtgagcaagtcatctctgataaactgatagatatgaacat 337

                                                                       
Query: 245 gagatcatgaacacaatatatttgcaataaatattaaattctatactcattggaatttta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gagatcatgaacacaatatatttgcaataaatattaaattctatactcattggaatttta 277

                                                                       
Query: 305 ttatgtttatattggagtaagcatgatatttttgtctaatttgggtacatatagttatat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttatgtttatattggagtaagcatgatatttttgtctaatttgggtacatatagttatat 217

                                                                       
Query: 365 caaatctcttaaccaaaatatataaaatatattatattttttacatattaaatttacttc 424
           |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 216 caaatctcttaatcaaaatatataaaatatattatattttttacattttaaatttacttc 157

                                                                       
Query: 425 aaatattctatgatgatagagagataggtagatgacaggcataaaacaaagttctttaaa 484
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aaatattctgtgatgatagagagataggtagatgacaggcataaaacaaagttctttaaa 97

                                                                       
Query: 485 atgtatttgcttttagtgattaagtaaaatatgttgaaacacatatttcaatatgcattc 544
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 96  atgtatttgcttttagtgattaagtaaaatatgttgaaacacatacttcaatatgcattc 37

                                               
Query: 545 attctgatcaggaacttcctacattaatcatttaaa 580
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  attctgatcaggaacttcctacattaatcatttaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no260_j22.g1 MSMg01no260_j22.g1 CHROMAT_FILE:
MSMg01no260_j22.g1 PHD_FILE: MSMg01no260_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:46 2005
         (659 letters)



>mm_chrX_84203105_84204163
          Length = 1059

 Score = 1228 bits (635), Expect = 0.0
 Identities = 657/671 (97%), Gaps = 12/671 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttagttagattcaaggagtaatttttcaaaagaggtacatttcatggaaatgtttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttttagttagattcaaggagtaatttttcaaaagaggtacatttcatggaaatgtttttg 248

                                                                       
Query: 61  ataattttttttcctttcataaaatacgaaactatttgtcctaggagacagctagtaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ataattttttttcctttcataaaatacgaaactatttgtcctaggagacagctagtaaca 308

                                                                       
Query: 121 ataggaagagacatttgcttgctttaaggggcagggttagcatttataatttcacaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ataggaagagacatttgcttgctttaaggggcagggttagcatttataatttcacaggag 368

                                                                       
Query: 181 cctcgtttctcttttgtattgccactgcacactgccttgcatttaaatgcaatgattgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cctcgtttctcttttgtattgccactgcacactgccttgcatttaaatgcaatgattgca 428

                                                                       
Query: 241 tcccaagtaattgttttgaccatttgaaacgtcatttttccaaagttctgagagatttag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tcccaagtaattgttttgaccatttgaaacgtcatttttccaaagttctgagagatttag 488

                                                                       
Query: 301 tcaatttcaatttgctcttctaattagttatatctttagattgcccatagatttgccatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tcaatttcaatttgctcttctaattagttatatctttagattgcccatagatttgccatc 548

                                                                       
Query: 361 aactctctattatcgagtcaagggaaagaaaaacagaaatgtgtcttcctgaaagcaatg 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 549 aactctctattatcgagtcaagggaaagaaaaacggaaatgtgtcttcctgaaagcaatg 608

                                                                       
Query: 421 ttttcctgctcaaatattatagacaggggatgattccattctctcgagtgcctaacaaac 480
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 609 ttttcctgctcaaatattatagacaggggatgattccattctctcgagagcctaacaaac 668

                                                                       
Query: 481 tttccacgtgaaactgtttgagatctagaagtgaggata-----------ctttaaaata 529
           |||||||||||||||||||||||||||||||||||||||           ||||||||||
Sbjct: 669 tttccacgtgaaactgtttgagatctagaagtgaggataggaatctgctactttaaaata 728

                                                                       
Query: 530 attataataaaaaaaaacc-ttagcttgttagatactgtgcttactactgaactgtgaaa 588
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 attataataaaaaaaaacccttagcttgttagatactgtgcttactactgaactgtgaaa 788

                                                                       
Query: 589 atgtagtgagacggtgtacatgaaatgaacaacataaaattgacaattgaaataaacaac 648
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 atgtagtgagacggtgtacatgaaatgaacaacataaaattgacaattgaaataaacaac 848

                      
Query: 649 ttttgactgtg 659
           |||||||||||
Sbjct: 849 ttttgactgtg 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)