Query= MSMg01no262_d21.b1 MSMg01no262_d21.b1 CHROMAT_FILE:
MSMg01no262_d21.b1 PHD_FILE: MSMg01no262_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:50 2005
(491 letters)
>mm_chrX_80477726_80478616
Length = 891
Score = 818 bits (423), Expect = 0.0
Identities = 466/487 (95%), Gaps = 11/487 (2%)
Strand = Plus / Plus
Query: 5 gaattcttaaccctttccctcataaaaccatcttattttcttaacctgagacaaggaaaa 64
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 205 gaattcttaacccttttagtcataaaaccatcttattttcttaacctgagataaggaaaa 264
Query: 65 gaaaatttcaatttatcatcatcttcaaaacccagaagtttaatttttaagagattatac 124
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 gaaaatttcaatttattatcatcttcaaaacccagaagtttaatttctaagagattatac 324
Query: 125 agtatttataaatgagtgagatgctatacacgagcaattttaacacttggatagatttaa 184
|||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 agtatttataaatgagtgagatgc-----------aattttaacacttggatagatttaa 373
Query: 185 ataatttatagataaattgttcattcataagtaaaagattgtgtcttcgtccaaactact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 374 ataatttatagataaattgttcattcataagtaaaagattgtgtcttcgtccaaaatact 433
Query: 245 tctacaagatgatgtttgaattctaaaatgcagctgttaagaatatctacaattaacagt 304
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tctacaaaatgatgtttgaattctaaaatgcagctgttaagaatatctacaattaacagc 493
Query: 305 atcattttataataacatttgtagtgtcttgaaggacaatgtcccccatagcctcatggg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atcattttataataacatttgtagtgtcttgaaggacaatgtcccccatagcctcatggg 553
Query: 365 tttaaatgctcgatcccagttagggaaaagatttgggaaggagtaggaactgtgacctta 424
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tttaaatgcttgatcccagttagggaaaagatttgggaaggagtaggaactgtgacctta 613
Query: 425 ttggagtcagtatagccttcttggagaagttatgtcactgtaggtgggctttggggtttc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ttggagtcagtatagccttcttggagaagttatgtcactgtaggtgggctttggggtttc 673
Query: 485 ttttttt 491
|||||||
Sbjct: 674 ttttttt 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_d21.g1 MSMg01no262_d21.g1 CHROMAT_FILE:
MSMg01no262_d21.g1 PHD_FILE: MSMg01no262_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:50 2005
(656 letters)
>mm_chrX_80630267_80631322
Length = 1056
Score = 864 bits (447), Expect = 0.0
Identities = 462/467 (98%)
Strand = Plus / Minus
Query: 1 cttagattatgtacctttaaatttttgataatcatgctgtattttttcaaatgctgacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cttagattatgtacctttaaatttttgataatcatgctgtattttttcaaatgctgacaa 408
Query: 61 ctaaatgtattctttaaactagcttcttgaaatccctttaaggccataatgaccttttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ctaaatgtattctttaaactagcttcttgaaatccctttaaggccataatgaccttttct 348
Query: 121 ttatctccattatgattcagtctgtaaatatatctttaggaatcaaacattgtctttatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ttatctccattatgattcagtctgtaaatatatctttaggaatcaaacattgtctttatt 288
Query: 181 ccttttggatatttcagtcgtctgaaaaagcagaatggagcaataagacccgaaaattat 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 287 ccttttggatatttcagtcgtctgaaaaagcagaatggagcaataagaccccaaaattat 228
Query: 241 ccagtaaaaagcatggacaaaattagtctgaagagatttccgagagtataagaatacttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ccagtaaaaagcatggacaaaattagtctgaagagatttccgagagtataagaatacttg 168
Query: 301 cttctttttcagaggacctaaattctatttcctatacctgtgctgagcagctcacaactg 360
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 167 cttctttttcagaggacctaaattctatttcccatacctgtgctgagtagctcacaactg 108
Query: 361 cttgtaactatacctctcaatggatccagtgtactgttctggcctcttcaggcacctaca 420
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 107 cttataactatacctctcaatggacccagtgtactgttctggcctcttcaggcacctaca 48
Query: 421 catatagcatgtgtaatctgacagatacaaacaaatacacataagta 467
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 catatagcatgtgtaatctgacagatacaaacaaatacacataagta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
