Query= MSMg01no263_f13.b1 MSMg01no263_f13.b1 CHROMAT_FILE:
MSMg01no263_f13.b1 PHD_FILE: MSMg01no263_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:14 2005
(320 letters)
>mm_chrX_143983116_143983836
Length = 721
Score = 598 bits (309), Expect = e-175
Identities = 315/317 (99%), Gaps = 1/317 (0%)
Strand = Plus / Plus
Query: 5 gaattcacctgggaagattttgtttgagaaacttggccactgagaccctaattgaattgg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 gaattcacctgggaagattttgtttgagaaacttggccactgagaccctaatttaattgg 264
Query: 65 tctggagtatggccttggtgcttaaaaaaaaaatcccttgtgattgtaatgtctagccag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctggagtatggccttggtgcttaaaaaaaaaatcccttgtgattgtaatgtctagccag 324
Query: 125 agcaggaaacactggtatatttcatcttatgcatgtatgagtgagagtttaaaaaaaaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcaggaaacactggtatatttcatcttatgcatgtatgagtgagagtttaaaaaaaaaa 384
Query: 185 aaaa-cacagaaagccttcccttcgttcttctttggaaatttgtcgatttcccttaagtc 243
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaaacacagaaagccttcccttcgttcttctttggaaatttgtcgatttcccttaagtc 444
Query: 244 aatattgctttggctcattttccagcaaccacttaattagcagaatagcatatctgctat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatattgctttggctcattttccagcaaccacttaattagcagaatagcatatctgctat 504
Query: 304 ttttaactcatgttcca 320
|||||||||||||||||
Sbjct: 505 ttttaactcatgttcca 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 721
Length adjustment: 9
Effective length of query: 311
Effective length of database: 712
Effective search space: 221432
Effective search space used: 221432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no263_f13.g1 MSMg01no263_f13.g1 CHROMAT_FILE:
MSMg01no263_f13.g1 PHD_FILE: MSMg01no263_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:14 2005
(663 letters)
>mm_chrX_144018816_144019878
Length = 1063
Score = 990 bits (512), Expect = 0.0
Identities = 541/560 (96%), Gaps = 15/560 (2%)
Strand = Plus / Minus
Query: 104 tatgcagacactctaccaactgagatatatccctagactaacaatgaagaatcaacttct 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1063 tatgcagacactctaccaactgagatatatccctagactaacaatgaagaatcaacttct 1004
Query: 164 aaaattaagacattagacaaagtagtacacatctgcaaacccaggatggaggatgctaag 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 aaaattaagacattagacaaagtagtacacatctgcaaacccaggatggaggatgctaag 944
Query: 224 gcaggaggatcagtagcttgaaagtcagtttgggttatgtagcaagttccaggccatatt 283
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 943 gcaggaggatcagtagcttgaatgtcagtttgggttatgtagcaagttccaggccatatt 884
Query: 284 catccccatactgtctcaaaaaaaaaaaaaaaaacaaaaacaaaatttgaaagaaaaaat 343
|||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 883 catccccatactgtctcaaaaaaaaa---------------aaaatttgaaagaaaaaat 839
Query: 344 taaactataaacaagtatactgataaagttggataagttaaaatatcatctactaggctt 403
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 838 taaactataaacaagtatactgataatgttggataagttaaaatatcatctactaggctt 779
Query: 404 tagatataatcacagatttaacacttgaaactctgaaaaaatatacagcttgataattaa 463
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tagatattatcacggatttaacacttgaaactctgaaaaaatatacagcttgataattaa 719
Query: 464 tatgcttcataattacaatatataatactctaggtctgtgagacattgaaaatgtccctg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tatgcttcataattacaatatataatactctaggtctgtgagacattgaaaatgtccctg 659
Query: 524 tgctagaaatctgaggcagcaattatgcaccaaataaggctacaaattaccatccagttt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tgctagaaatctgaggcagcaattatgcaccaaataaggctacaaattaccatccagttt 599
Query: 584 gatttaattgcctttgactgtgcttctctttgcctgctagggtgccaatttaaggtcccc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gatttaattgcctttgactgtgcttctctttgcctgctagggtgccaatttaaggtcccc 539
Query: 644 tgcctacaaaatgctttacc 663
||||||||||||||||||||
Sbjct: 538 tgcctacaaaatgctttacc 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
