BAC Information

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BAC

Clone NameMSMg01-263K11
ChromosomeX (Build37)
Map Location 57,427,274 - 57,427,420
singlet/doubletsinglet
Overlap genenone
Upstream geneF9, EG434782, Mcf2
Downstream geneAtp11c, LOC666517, LOC631784, LOC100039611, LOC100039621, Gm715, Hspa9-ps1, EG236831, LOC666559, LOC671636, Sox3, EG631922, Rpl7l1-ps, LOC627159
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263K11.T7 (MSMg01no263_k11.b1)MSMg01-263K11.TJ (MSMg01no263_k11.g1)
ACCAG405415AG405416
length757757
length of high quality
(start - end)
149 (131 - 279)324 (76 - 399)
definitionCHROMAT_FILE: MSMg01no263_k11.b1 PHD_FILE: MSMg01no263_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:38 2005CHROMAT_FILE: MSMg01no263_k11.g1 PHD_FILE: MSMg01no263_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGGCCATCTCCAGCTATATAGTTTTTCAGGGCAGCCTGGTCTACA
TGAGAGTTTGTTTCAAAATAATAACCCGTTTAGCCCCATTAAAGACCCAT
TATTCGTTGGAATACATTTTACAGCATTGTGCAATGTATGTAAATCAATG
CTGTCATTTATACTCTTCTTATATTTGAGCTAAAACTTAATGATGCCACA
TTGCAGTTGAAAATAAATTTGGCCGGGTAGTGGTGGCGCAGGCCTTTAAT
CCCAGCACTTGGAAGGCAGAGGCTGTTAGATCTCTAAATTCAAGGTCAGC
CTGGTCTACAAATTGATTTTCAGCACAGCCCCCCCTGTATAGTGAAACCC
TGCCTCACATAACCATAAGAATCCCCCTCTAATCATACCCTTCCTATCCT
TTTCTAATGATCTCTTTTACCACGAAAAATAGACTTATTCTGTACACCTG
ATAGGTTTCCACTCCTCCCTATATTCTTATTCGGTTATGTGCTCTAGTAA
AATAAAACAGATTATATTCTTCTCAGAGTGTCCATTTATTTTTTCCCACT
GATTATCTAACTATTGTCACCCTGTGCCAAACGTTAAAATTGCCCTACTT
ATCCTCATTGATCATGCTCACCATTTTTTACACTCCTGCAGAATCTCACC
ATATCATCTCATTTGTTATTTTACATTTCTTCGTCCTAATAATTTCTATC
TTCTAAA
ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGGTTTAGTTCTATACCCCATTTT
TTGATTGGGTTGTTTCATTTTTTGGTGATTAACTTTTTGAGTTTTTTATA
TATTTTGGATATTAGCCCTCTATCGGATGTGGGGTTAGTGAAGATTTTTT
TCCCAATCTGTAGGTTGCCTATTTGTCTTATTGACTATGGCCTTTGCTTT
ACAGAAGCTTTCCAGTTCCATAAGGTTTCCACTTATCAATTCTTGATCTT
AGAGCATGAGCCATTGGAGTTCTCTTTAGGAAATTTCCCCCTGTGCCAGT
GTGTTCTTGGCAGTTTATATTTTCTGTGGGTTCCTAATTGGCAGTCTTCA
AAGACATTGATATCCCCCCCAGCGAGTAGGTATTTTTATATTCACAAATT
ATCTATTCTTTTATGTCTTATGATTCTAACAGTTCTGTCTTTCACTTCAT
AATGCTTACTGATTATTGCAATACCTCCTACCCGCCTTTCACCAACAACT
TTGCTCTTGGGCTTGCAGCGAAGTCTTCCTTATCCAGAACATTCTCTTCG
CTTTCCTTCCTCTGGTACCCCCGCCCTTCTGGTATCCGATTATTTCACTC
TGCCTTCCTCTTCACGCCCATTTGTTTGTCCTTTTTTTGTGCTTTTCGTT
CGCTCTATCCGATTCTCTTTGCTTTCTCTTTTCCTCTTCCCTTTTTTATA
TCCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_k11.b1 MSMg01no263_k11.b1 CHROMAT_FILE:
MSMg01no263_k11.b1 PHD_FILE: MSMg01no263_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:38 2005
         (149 letters)



>mm_chrX_57427074_57427622
          Length = 549

 Score =  277 bits (143), Expect = 3e-79
 Identities = 146/147 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagccccattaaagacccattattcgttggaatacattttacagcattgtgcaatgtatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagccccattaaagacccattattcgttggaatacattttacagcattgtgcaatgtatg 260

                                                                       
Query: 61  taaatcaatgctgtcatttatactcttcttatatttgagctaaaacttaatgatgccaca 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 taaatcaatgctgtcatttatactctttttatatttgagctaaaacttaatgatgccaca 320

                                      
Query: 121 ttgcagttgaaaataaatttggccggg 147
           |||||||||||||||||||||||||||
Sbjct: 321 ttgcagttgaaaataaatttggccggg 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 549
Length adjustment: 8
Effective length of query: 141
Effective length of database: 541
Effective search space:    76281
Effective search space used:    76281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)