BAC Information

Click to search

BAC

Clone NameMSMg01-264A20
ChromosomeX (Build37)
Map Location 165,908,525 - 165,908,836
singlet/doubletsinglet
Overlap genenone
Upstream geneFrmpd4, EG637566, Msl31, Arhgap6, Amelx, Hccs, LOC100040950, BC022960
Downstream geneMid1, 4933400A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264A20.T7 (MSMg01no264_a20.b1)MSMg01-264A20.TJ (MSMg01no264_a20.g1)
ACCAG405706AG405707
length742883
length of high quality
(start - end)
317 (45 - 361)---
definitionCHROMAT_FILE: MSMg01no264_a20.b1 PHD_FILE: MSMg01no264_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:08 2005CHROMAT_FILE: MSMg01no264_a20.g1 PHD_FILE: MSMg01no264_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAACACTGGCCCTCCACCAAGAATGCAGTATCCTTACCCTTCCAC
TTCAAGCCCAGAGATGTTCTCAGTAAAAATAACCTTAGCTAATCATAACT
GCTGGGGAAGCTAGAGATAATCTTCATAAGGTCACAAAGAGCTTTAAAAA
ATGTCTTTAGAGATCAAACAACTCTTACTAAGAAAGGGTTAGAAAATTCA
GGGTACACTCATTTATCCTCCCCTCCCCATGCCCCTCAGACAAATGAGAT
GCTGAGAGGCTGGGATAATTCTCAAGCAGCATACTCAATCAATTCCTACT
TCCACACTGTACTATTACCTCACCCCCACCGCCCCTTGGTAAATTAGTAG
TATGAAGCTAAATAACTCAAAACAGACAATCATCATAGTGACAGACTTAT
AAAAGGCAGTTGCAGGAAATTGCACAAAATAAGCAGAATAAATAATTCTG
GGGAGAATTGGATGCTTTTTCCAACAACCACCTGACAGCCTAACTTTCTT
TCAAATTTTACATCTACCCCCTTCTCTTCTTTGCCAGATGAATGTGCTTC
CAGCTGGACTTAGGAGAGGCAATGGTGTCAACCAATGACTCGTTAAAAAA
TACACACCTGTCATAAATGCAAGGCTCTCTCAAGGGATATATTAAATTGC
ATTCCTTGCTTTCTATGAAAAGGTGCAATGAAAAAAAATGAG
CCCCCTTCAAACATCCCCTTTTCTCCCAACCCGCNNTTTTCNNTNNNNTT
TTCTATGATAGTGGGTAGGCCTGGGGCGGCCGCCTGGGGCCGTCGTACAA
TTCTAGTGGTGGGACACCTTAATTAAGTTAAAAAGGGGATAATTTCCCCC
CGGTTCCGTGGTCAAAAATTTCCCACGAGGTCCCTTTTCATGCTTAGAGT
GAGTTATCATTTTTCCATATTTTACACCAAAAGTTAACGGTTTTCCCATT
AAGTAACCTTTGTTGTAAGGGGTAAAACCCAGCCAGGAATAGGAAGATGG
GGTTATTGGTATTGGGGGTTAGGGTTTTTTGGTTAAACTTTGGAATGGGA
GACCCCTGGGTCTTTCTTCTCAGAAGGGGCCCAGTGGGGGCCAAAGCCCC
CTAATGGGGGGGGGAAAAAATTTTTCCCCCCCGCCCATATGGGGTGAAAA
CGGGGGGGCCCCCCCCGCGAGGGGGGGGTTATGTTTTTTCTTTTTTATAA
AACCGCCCAAGGGGGGGCCCCCGGGGGGTATCACCTTCTTTTTTTCCCAA
AATGTGGGGGGGGGGGGACCACCCCCCCGGGGGGGCCCCCCCCCGGGGGT
TTTNGAGTGGGATTTTCCCCGCCCCCCCGGACAAACTCCCCGAGTATGTG
GGTGATGTGTAAAAAATAACGGGGGTGGGAAAACCCTGTCTAAAAAAAGA
GAGGCCCCCGCCAATGAAAAAACAAAAAAAAATAAGCCGCCCCCCCGGGG
TGTTCTCTGCCCCTCCCCCCTAATAAAAAGAGAAATAACTCATGTATAGA
AGAAAGGGTGATCTACTAAATCCATGTTATAATAATCTTCGCGGGGGGAT
TGCTGCGCGAGTGATAATAATGAATGGAAGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_a20.b1 MSMg01no264_a20.b1 CHROMAT_FILE:
MSMg01no264_a20.b1 PHD_FILE: MSMg01no264_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:08 2005
         (317 letters)



>mm_chrX_165908321_165909038
          Length = 718

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%), Gaps = 1/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaacactggccctccaccaagaatgcagtatccttacccttccacttcaagcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattccaaacactggccctccaccaagaatgcagtatccttacccttccacttcaagcc 457

                                                                       
Query: 65  cagagatgttctcagtaaaaataaccttagctaatcataactgctggggaagctagagat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cagagatgttctcagtaaaaataaccttagctaatcataactgctggggaagctagagat 397

                                                                       
Query: 125 aatcttcataaggtcacaaagagctttaaaaaatgtctttagagatcaaacaactcttac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aatcttcataaggtcacaaagagctttaaaaaatgtctttagagatcaaacaactcttac 337

                                                                       
Query: 185 taagaaagggttagaaaattcagggtacactcatttatcctcccc-tccccatgcccctc 243
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 336 taagaaagggttagaaaattcagggtacactcatttatcctccccctccccatgcccctc 277

                                                                       
Query: 244 agacaaatgagatgctgagaggctgggataattctcaagcagcatactcaatcaattcct 303
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 276 agacaaatgagatgctgagaggctgggataaagctcaagcagcatactcaatcaattcct 217

                       
Query: 304 acttccacactg 315
           ||||||||||||
Sbjct: 216 acttccacactg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 718
Length adjustment: 9
Effective length of query: 308
Effective length of database: 709
Effective search space:   218372
Effective search space used:   218372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)