BAC Information

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BAC

Clone NameMSMg01-267F10
ChromosomeX (Build37)
Map Location 89,931,819 - 89,932,154
singlet/doubletsinglet
Overlap genenone
Upstream geneMageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893, Mageb18, EG436259, EG668061, EG546347, LOC629568
Downstream geneLOC100042663, Rp23-438h3.2, Arx, Pola1, EG629581, Pcyt1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267F10.T7 (MSMg01no267_f10.b1)MSMg01-267F10.TJ (MSMg01no267_f10.g1)
ACCAG408087AG408088
length733721
length of high quality
(start - end)
318 (45 - 362)336 (386 - 721)
definitionCHROMAT_FILE: MSMg01no267_f10.b1 PHD_FILE: MSMg01no267_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:23 2005CHROMAT_FILE: MSMg01no267_f10.g1 PHD_FILE: MSMg01no267_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGATCATGGGCCCACTGTCGTACTTCTCTGGCTGTGAAGTGAGT
TCCTTGGTCAGAAGCAATACTGCGTGGAATACCATGACGATAGATAAGGC
ATTCTGTCAGTCCGTGAATGGTGGTTTTAGCAGAGGCATTACGTGCAGGA
AAGGCAAATCCATAACCAGAATAAGTATCTACTCCAGTAAGAACAAAACG
CTGTCCTTTCCAGGAAGGAAGTGGTCCAATGTAGTCAACCTGCCACCAGG
TTGCTGGCTGGTCACCTCGAGGAATGGTGCCATATCTGGGGCTCAGTGTT
GGTTTCTGCTGTTGTTTTATCTCCCCCCCCGCAGCAGCTGTAGCCAGGTC
AGCCTTGGTGAGTGGAAGCCCATGTTGCTGAGCCCAAGCATAACCTCCAT
CTCGACCACCATGGCCACTTTGTTCATGTGCCCATTGAGCAATGACAGGG
ATGGCTGGGGAGAGAGGCTGATTGTCCACAGAACGGGTCATCTTATCCAC
TTGATTATTGAACTCATCCTCGGCTGAAGTCACCTTTTGGTGAGCATTTA
CATGGGACACAAATATCTTCACATCCTTTGCCCATTTGGAGAGATCTATC
CACATACTTCTTCCCCAGATGTCTTTCTCACCAATGTGATATTTTGTGGA
AGATCCATACGATCAAGATCCCTTCTAACTAAA
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAATTATGCCATATTTGTAGATT
GGTAAACTGAGGTTAATGGGAATCAACTTTAGTGTTAGAGGTGAAATTAT
TCATTCAAATTCTCTATTGCTACAAAACATACTGATTTATTTATTATTAT
GTAGATACATGTGTGTATATGCATAGGCACATATAAGTATAAATATACTT
ATTGCAGAGAAAGCTGAATAGTCTCAGTAGAAATTATACAGCCTACAGAA
ACCAATATACCCACTATGTTGTCTTCTGCAAATGATCACCAAAATTATTA
TCTAGGAAAGTTTGTTTTACAAGCTCACCCCGCGCAAATAAAGATTCTGC
AAAGTGAGTATTGCTCACAATCATGTCTCAACTCGGTAAAATGAGAAGAG
AAAGTAAATTTATTCAAGAAATTGGTGCACAAAATGCAATGAATTAGTCA
AACAAGTTGTAAAACAATAAGGAACAAAGAAATGTATTTATAAGCTGATA
AACAGTAATATAAAAATAAGAGGATAAGCTCTCATAGGAACTTGAAACAT
AGCTAAATGACAGGTCAGAGCAATAAATGCAAGCAGAAATTGGAAAAGAA
GTCAGGCCTCACCTTCTAAGTTAAAGAGACATTATTACTTACATGATTGA
TGGAAATTATGCAAGACAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_f10.g1 MSMg01no267_f10.g1 CHROMAT_FILE:
MSMg01no267_f10.g1 PHD_FILE: MSMg01no267_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:23 2005
         (336 letters)



>mm_chrX_89931619_89932354
          Length = 736

 Score =  642 bits (332), Expect = 0.0
 Identities = 335/336 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaataaagattctgcaaagtgagtattgctcacaatcatgtctcaactcggtaaaatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaataaagattctgcaaagtgagtattgctcacaatcatgtctcaactcggtaaaatgag 260

                                                                       
Query: 61  aagagaaagtaaatttattcaagaaattggtgcacaaaatgcaatgaattagtcaaacaa 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagagaaagtaaatttattcgagaaattggtgcacaaaatgcaatgaattagtcaaacaa 320

                                                                       
Query: 121 gttgtaaaacaataaggaacaaagaaatgtatttataagctgataaacagtaatataaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgtaaaacaataaggaacaaagaaatgtatttataagctgataaacagtaatataaaa 380

                                                                       
Query: 181 ataagaggataagctctcataggaacttgaaacatagctaaatgacaggtcagagcaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataagaggataagctctcataggaacttgaaacatagctaaatgacaggtcagagcaata 440

                                                                       
Query: 241 aatgcaagcagaaattggaaaagaagtcaggcctcaccttctaagttaaagagacattat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgcaagcagaaattggaaaagaagtcaggcctcaccttctaagttaaagagacattat 500

                                               
Query: 301 tacttacatgattgatggaaattatgcaagacagtg 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacttacatgattgatggaaattatgcaagacagtg 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)