BAC Information

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BAC

Clone NameMSMg01-267J16
ChromosomeX (Build37)
Map Location 151,083,921 - 151,084,207
singlet/doubletsinglet
Overlap geneLOC667331
Upstream geneLOC667241, Kctd12b, 2210013O21Rik, Smt3h1-ps, Spin2, 4921511M17Rik, OTTMUSG00000019268, LOC625650, LOC100040020, EG546397, OTTMUSG00000019256, EG434874, LOC635580, EG625767, LOC270665, LOC100040076, 4930524N10Rik, EG434879, LOC667313, 4930542N07Rik, EG434881, LOC100040899
Downstream geneLOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4, LOC667394, Ptchd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267J16.T7 (MSMg01no267_j16.b1)MSMg01-267J16.TJ (MSMg01no267_j16.g1)
ACCAG408275AG408276
length755736
length of high quality
(start - end)		321 (45 - 365)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no267_j16.b1 PHD_FILE: MSMg01no267_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:42 2005CHROMAT_FILE: MSMg01no267_j16.g1 PHD_FILE: MSMg01no267_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTCTGGCGGTTCCTCAGAAAATTGTATATAGTTCTACCAGAGGAT
CCTGCAATACCTCTCCTGGGCATAGATTCAGGAGGTGTTCCAACCGCTAA
GAGGGACACATGCTCAACTATGTTCATAGCAGCCTTATTTGTAATAGCCA
GAAACTGGAAAGAACCCAGATGCCCCTCAACAGAGGAAATGGATACAGAA
AATATGTTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGGCAAGTGTATGGACCTGGAGGGTATCATCCTG
AGTGAGGTAACCTTTATTCTTAAGACNGCCCATCACATGTACTCACTGAT
AAGTGGATATTAGCCCACACACTTATAATACCCAAGGTACAAGATACGAT
TTGCAAAACACATTAAACTCAAAAAGAATGAAGAGGAAAGAGCGGACACT
TTGCTCCTTCTTAGTATCTGGTCATTTCCAACAAGAACAAAATGGTCTGT
GCCATCTTCCCAATCCCAGACATATGTCTGGATGTATACATGGCCCTGTG
GCTTTGTCTGATAAACAAAAGATCATTGCCTATCAGAGTCTTGCCCACAA
TTTCTTACTTCTGTAAAACAGCTTGTGGACATATTTGCTAAGGATATTTC
CTTTAGAAATAATCTTGAATGTACTATATCTGCACTCCTAGGTAAAGATC
TAAAN

ACAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGAATCATGGAACAGCCCTCTC
CAGTGTTTATTAGGGAGAAACAAGTCTCATTTTGCATATCTTTCTTCAGC
TCTTATTTCTGCTTCAGTTGCCCCACCACCTTATTCCAAAAACATTTTTC
TTTAAATTCTTAACTGAAAACATTTCAAGCAAGGCCTTGTATTGCTTACC
TATAATGCCTACACTTAGGATATATAGAGAGGAAGATCACAAGTTTTATC
CAGACTGGGTCATACATTTAGAGCCAGTCAAAAAGAAACAAGAAAAAAAG
AAGGTGGGAAGGAATTATATGATGCATACCATTACATTGTAGATAGTGTC
TTTACCTTGGTCCTGGAATAAAATCAGTGAAATGTTCTAGTATGAAACTG
CTTGAAGAAGATATGATGACCACATGTCATATATGACCCAAGGTTCGATC
CAAAAAGAGACTGCCAGAGTGTCAATTTCAGGAAATCTGTTTTGACCTTA
CTTTGCATTTCAAATTCTTGTGATTTCCATGCAAATATGTCAGGCAAGAC
ACAGAGTATAGAGCAGAAAAGTTAAGGTTCATTACACAGTAGTAGAAAGC
ATGTTTGAGAGGTGAGAGTGGCCGGGTGTGGTGNCGCATACCTTTAATCC
CAGCACTTGGGAGGCAGAGGCAGTCGGATTTCTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_j16.g1 MSMg01no267_j16.g1 CHROMAT_FILE:
MSMg01no267_j16.g1 PHD_FILE: MSMg01no267_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:43 2005
         (287 letters)



>mm_chrX_151083721_151084407
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgaatcatggaacagccctctccagtgtttattagggagaaacaagtctcattttgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 actgaatcatggaacagccctctccagtgtttattagggagaaacaagtctcattttgca 428

                                                                       
Query: 61  tatctttcttcagctcttatttctgcttcagttgccccaccaccttattccaaaaacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tatctttcttcagctcttatttctgcttcagttgccccaccaccttattccaaaaacatt 368

                                                                       
Query: 121 tttctttaaattcttaactgaaaacatttcaagcaaggccttgtattgcttacctataat 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tttctttagattcttaactgaaaacatttcaagcaaggccttgtattgcttacctataat 308

                                                                       
Query: 181 gcctacacttaggatatatagagaggaagatcacaagttttatccagactgggtcataca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gcctacacttaggatatatagagaggaagatcacaagttttatccagactgggtcataca 248

                                                          
Query: 241 tttagagccagtcaaaaagaaacaagaaaaaaagaaggtgggaagga 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tttagagccagtcaaaaagaaacaagaaaaaaagaaggtgggaagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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