BAC Information

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BAC

Clone NameMSMg01-268A07
ChromosomeX (Build37)
Map Location 106,550,638 - 106,550,953
singlet/doubletsinglet
Overlap genenone
Upstream geneGm378, LOC668516, Gm379, Brwd3, 5730416F02Rik, Nsbp1, Sh3bgrl, EG622976, LOC100042831
Downstream geneLOC213474, LOC245573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268A07.T7 (MSMg01no268_a07.b1)MSMg01-268A07.TJ (MSMg01no268_a07.g1)
ACCAG408577AG408578
length728731
length of high quality
(start - end)
320 (45 - 364)608 (74 - 681)
definitionCHROMAT_FILE: MSMg01no268_a07.b1 PHD_FILE: MSMg01no268_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:13 2005CHROMAT_FILE: MSMg01no268_a07.g1 PHD_FILE: MSMg01no268_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACTTGTTTAGAATTTCTTCACTGACACCTACATGACTTAGGTATA
GTACTTTAGACTGCAGTGGAACCTCCCCTGCCACTTAATTCATGGGATTT
CTGTCTTTTTGCTCCTTGCATAGATCGAAATACTTGTTTTTAAAGGTATT
TTATTAGCTGAAAGAGTAATAGCACATACCTTTAATACTTTAATATTATT
TTATGTGTTTGGGTATTTTTCCTGAATATATGCTTGTTTACATGATGTTT
CCTGGTTGTACATTTATCAGCATAAAAAGAGAAACCTTGAAAAAGGACAA
TCTGTGTGTGGAAAGTAATAAATGACCACTAATATTATGAATATTCACTG
TATATTATACTTATTTGAGTAGAAGAATATGTTGTTTTTTTGGATTATGG
CATAATCTTGGAGGAACTATTTTGATTAAATTTATAAAATATTTACTACT
CAGGTATAATTTATTTTAACTGGTATGAATTCATTACAATTGCATATTTA
GCTCAAGATAAAATAATTTAATTTTGCATGTATACATTTTTCTAATATTT
GATTTGACCATCTCATGTCTCTAATTCCAAAAATCAATGCCTAAAAATCT
AACATTTGTCAGACAGCAGTTGTCTATAATATAACAACCCACAAATGCTG
TACATATATGGAGTAAATATACATATAA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCAG
CAATACCTCTCCTGGTTTTATATCCACGAACATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAGATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGCAACACATTCACAAAGAAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCT
AAGCACATGANACTCAAGAAGAATGAAGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_a07.b1 MSMg01no268_a07.b1 CHROMAT_FILE:
MSMg01no268_a07.b1 PHD_FILE: MSMg01no268_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:13 2005
         (320 letters)



>mm_chrX_106550434_106551153
          Length = 720

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacttgtttagaatttcttcactgacacctacatgacttaggtatagtacttta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacttgtttagaatttcttcactgacacctacatgacttaggtatagtacttta 264

                                                                       
Query: 65  gactgcagtggaacctcccctgccacttaattcatgggatttctgtctttttgctccttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 gactgcagtggaacctcccctgccacttaattcatgggatttctgtctttttgttccttg 324

                                                                       
Query: 125 catagatcgaaatacttgtttttaaaggtattttattagctgaaagagtaatagcacata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catagatcgaaatacttgtttttaaaggtattttattagctgaaagagtaatagcacata 384

                                                                       
Query: 185 cctttaatactttaatattattttatgtgtttgggtatttttcctgaatatatgcttgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctttaatactttaatattattttatgtgtttgggtatttttcctgaatatatgcttgtt 444

                                                                       
Query: 245 tacatgatgtttcctggttgtacatttatcagcataaaaagagaaaccttgaaaaaggac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tacatgatgtttcctggttgtacatttatcagcataaaaagagaaaccttgaaaaaggac 504

                           
Query: 305 aatctgtgtgtggaaa 320
           |||||| |||||||||
Sbjct: 505 aatctgagtgtggaaa 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)