BAC Information

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BAC

Clone NameMSMg01-268L21
ChromosomeX (Build37)
Map Location 124,017,980 - 124,166,002
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039903, LOC665679, 4932411N23Rik, Gm381, LOC100040472, Gm382, 4921511C20Rik
Downstream gene4930412D23Rik, LOC385523, LOC100040516, Mdm4-ps, EG237030, LOC100040538
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268L21.T7 (MSMg01no268_l21.b1)MSMg01-268L21.TJ (MSMg01no268_l21.g1)
ACCAG409068AG409069
length744742
length of high quality
(start - end)		323 (46 - 368)293 (75 - 367)
definitionCHROMAT_FILE: MSMg01no268_l21.b1 PHD_FILE: MSMg01no268_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:05 2005CHROMAT_FILE: MSMg01no268_l21.g1 PHD_FILE: MSMg01no268_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,017,980 - 124,018,295)(124,165,711 - 124,166,002)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATATTTAGTGAAACTTCTTTATTTACACCTCAATTCTCTCTCTA
TCAGGAGACATGTGCTTGCTCACGTATTTAACACAAGTCAATGTGTTATC
ACTTCAATTTGTATTAATTATATATTGGAAGAAAACTCATGGAGGAAGTC
AGATAAAAAGATACCTTAAATTATAATCTAAACAATTTATCTGAGGATAT
TTATGCAATTTTCTTGTATGTGATACTGTACCAAAACAAAACAAAAATGT
TTATTCAATAACACAATAAAAGGGGAGTAACATTTGAAATGTTCCAACTC
AATAAAGGTGGAATGTTTNAGTGAATATCGCCGTCCTAACCCATTTATAG
CATACTAGTGTATGTAAATTTAATTTATCATATAAGAAAAATAAAATTTT
GGAGATTGTCTCTCATCTATCTAGAGGTGTGTGAATTAATGTCCTTCCCT
CATGACAGATATGCTACTCAAACACCACATAAGACATAATTTCTAGAATA
TTTCATCCAAGCCTAATATTTTTCCAATATTATTATCCAAGTCTAATATT
TTTCTTAGACTATATAGTTGCCGAATTATTAAAATATATCACTGAAAAAT
GAATGTGATTCTATGAGCTATGCCTGCATATTTTTGGAAAGATCAGTAAT
GGGTTGAAAAGATTGCTCAGTGTTTGAGTTCTTTCTGCTTTTCG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTCCTTTACTCCACATGTACTCTGA
CTTATACGTGGATACCACAAAATGAACTTAGCTCTCCATGTTTGCATAGC
AAATTCCCTTACCTACTGAGCCATCTCACAGGACCAAATATATTCCTTCT
TATAAATGTAAGTTCCAATCCAAGTAATAACATTGCCCTCTATCAGAAAA
TACCCAAAGAAACTAAAATCTTTCTTTTTTGTTTTTTGTGAAATTTGTGT
TTGTTTGGGTAAATGGCAATTGAATGAAATACCTTCCACAAGATCCACAG
GAAGGCCACAGTGTGATTTTTTGCCTCCGCCCCCCCCTCGCTGGGGGACA
GATATGAAGACCAAGCTACACATCTGTTACATATGTGCAGAGGGCCTAGG
TCCAGCCCATGTTTGCTGTTTGGTTGGTGGTTCAGTCTCTTAAAGACTCC
AGTTGATTCTGTTCACCATCTTGTGGAGCACCTATTCCATTCAGTTACCT
CAATCCTTCCCCCAACTCTTCCACAACACTGCCCAAGTTCTGTATAATGT
TTGGCTGAGGGTTTATATATCTGTTTCAACTGGCTGCTGGGTGGAGCCTC
TCAGAGGGCAGCTATGCTAGGTTCCTGTCTACAAGCATTAAAGAGTATCA
TTAATATTATCCAGAATTGTATCTTGCACACGAGATGGGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_l21.b1 MSMg01no268_l21.b1 CHROMAT_FILE:
MSMg01no268_l21.b1 PHD_FILE: MSMg01no268_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:05 2005
         (323 letters)



>mm_chrX_124017776_124018498
          Length = 723

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatatttagtgaaacttctttatttacacctcaattctctctctatcaggagac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatatttagtgaaacttctttatttacacctcaattctctctctatcaggagac 264

                                                                       
Query: 65  atgtgcttgctcacgtatttaacacaagtcaatgtgttatcacttcaatttgtattaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgtgcttgctcacgtatttaacacaagtcaatgtgttatcacttcaatttgtattaatt 324

                                                                       
Query: 125 atatattggaagaaaactcatggaggaagtcagataaaaagataccttaaattataatct 184
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atatattggaagaaaattcatggaggaagtcagataaaaagataccttaaattataatct 384

                                                                       
Query: 185 aaacaatttatctgaggatatttatgcaattttcttgtatgtgatactgtaccaaaacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaacaatttatctgaggatatttatgcaattttcttgtatgtgatactgtaccaaaacaa 444

                                                                       
Query: 245 aacaaaaatgtttattcaataacacaataaaaggggagtaacatttgaaatgttccaact 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 aacaaaaatgtttattcaataacacaataaaaggggaataacatttgaaatgttccaact 504

                           
Query: 305 caataaaggtggaatg 320
           ||||||||||||||||
Sbjct: 505 caataaaggtggaatg 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no268_l21.g1 MSMg01no268_l21.g1 CHROMAT_FILE:
MSMg01no268_l21.g1 PHD_FILE: MSMg01no268_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:05 2005
         (293 letters)



>mm_chrX_124165408_124166100
          Length = 693

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcctttactccacatgtactctgacttatacgtggataccacaaaatgaacttagctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 595 agtcctttactccacatgtactctgacttatacgtggataccacaaaatgaacttaggtc 536

                                                                       
Query: 61  tccatgtttgcatagcaaattcccttacctactgagccatctcacaggaccaaatatatt 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 535 tccatgtttgcatagcaaattcccttacctactgagacatctcacaggaccaaatatatt 476

                                                                       
Query: 121 ccttcttataaatgtaagttccaatccaagtaataacattgccctctatcagaaaatacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ccttcttataaatgtaagttccaatccaagtaataacattgccctctatcagaaaatacc 416

                                                                       
Query: 181 caaagaaactaaaatctttcttttttgttttttgtgaaatttgtgtttgtttgggtaaat 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 415 caaagaaactaaaatctttcttttctgttttttgtgaaatttgtgtttgtttgggtaaat 356

                                                               
Query: 241 ggcaattgaatgaaataccttccacaagatccacaggaaggccacagtgtga 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ggcaattgaatgaaataccttccacaagatccacaggaaggccacagtgtga 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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