This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Parameter
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Search Result
BAC
Clone Name
MSMg01-269F08
Chromosome
X (Build37)
Map Location
152,617,539 - 152,717,134
singlet/doublet
doublet
Overlap gene
none
Upstream gene
Sat1
,
Acot9
,
LOC667383
,
Prdx4
,
LOC667394
,
Ptchd1
Downstream gene
4930503H13Rik
,
LOC640803
,
LOC434885
,
Phex
Link
Open Mouse BAC browser
Click to get alignment info.
name
Sat1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:20229
MGI:98233
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Acot9
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:56360
MGI:1928939
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC667383
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:667383
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins
name
Prdx4
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:53381
MGI:1859815
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC667394
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:667394
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs, 4 Proteins
pseudo
: _no_value
name
Ptchd1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:211612
MGI:2685233
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 7 ESTs, 4 Proteins
name
4930503H13Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:74941
MGI:1922191
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
name
LOC640803
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:640803
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs, 7 Proteins
pseudo
: _no_value
name
LOC434885
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:434885
definition
note
: succinate-Coenzyme A ligase, GDP-forming, beta subunit pseudogene
pseudo
: _no_value
name
Phex
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:18675
MGI:107489
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Sat1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:42476316
GeneID:20229
MGI:98233
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: spermidine/spermine N1-acetyl transferase 1
transcript_id
: NM_009121.3
name
Acot9
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:31980997
GeneID:56360
MGI:1928939
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: acyl-CoA thioesterase 9
transcript_id
: NM_019736.2
name
LOC667383
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:94408468
GeneID:667383
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins
product
: similar to ring finger protein 168
transcript_id
: XM_990244.1
name
Prdx4
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142387935
GeneID:53381
MGI:1859815
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: peroxiredoxin 4
transcript_id
: NM_016764.2
name
Ptchd1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94408470
GeneID:211612
MGI:2685233
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 7 ESTs, 4 Proteins
product
: patched domain containing 1, transcript variant 1
transcript_id
: XM_142262.5
name
Phex
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:116686145
GeneID:18675
MGI:107489
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)
transcript_id
: NM_011077.2
name
Sat1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6677849
CCDS:CCDS30495.1
GeneID:20229
MGI:98233
definition
GO_function
: GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0004145 - diamine N-acetyltransferase activity [Evidence IEA]; GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0046208 - spermine catabolism [Evidence TAS]
codon_start
: 1
product
: spermidine/spermine N1-acetyl transferase 1
protein_id
: NP_033147.1
name
Acot9
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31980998
GeneID:56360
MGI:1928939
definition
GO_component
: GO:0005739 - mitochondrion [Evidence IDA]
GO_function
: GO:0003986 - acetyl-CoA hydrolase activity [Evidence IDA]; GO:0016291 - acyl-CoA thioesterase activity [Evidence IDA]; GO:0016290 - palmitoyl-CoA hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]
GO_process
: GO:0006637 - acyl-CoA metabolism [Evidence TAS] [Evidence IDA]
codon_start
: 1
note
: mitochondrial acyl-CoA thioesterase
product
: acyl-Coenzyme A thioesterase 2, mitochondrial
protein_id
: NP_062710.2
name
LOC667383
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:94408469
GeneID:667383
definition
codon_start
: 1
product
: similar to ring finger protein 168
protein_id
: XP_995338.1
name
Prdx4
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:7948999
CCDS:CCDS30496.1
GeneID:53381
MGI:1859815
definition
GO_component
: GO:0005739 - mitochondrion [Evidence IDA]
GO_function
: GO:0016209 - antioxidant activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]; GO:0051920 - peroxiredoxin activity [Evidence IEA]
GO_process
: GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
note
: antioxidant enzyme AOE372; Prx IV
product
: peroxiredoxin 4
protein_id
: NP_058044.1
name
Ptchd1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:38086898
GeneID:211612
MGI:2685233
definition
codon_start
: 1
product
: similar to patched domain containing 1 isoform 1
protein_id
: XP_142262.3
name
Phex
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6755050
CCDS:CCDS30497.1
GeneID:18675
MGI:107489
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0004245 - neprilysin activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0001503 - ossification [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
codon_start
: 1
product
: X-linked phosphate regulating endopeptidase
protein_id
: NP_035207.1
name
4930503H13Rik
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:74941
definition
number
: 1
name
4930503H13Rik
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:74941
definition
number
: 2
name
LOC667394
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149272525
GeneID:667394
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs, 4 Proteins
product
: similar to ribosomal protein L6
pseudo
: _no_value
transcript_id
: XR_032467.1
name
LOC640803
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149272490
GeneID:640803
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs, 7 Proteins
product
: similar to ribosomal protein L23a
pseudo
: _no_value
transcript_id
: XR_031668.1
clone name
MSMg01-425D15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-343D11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-477L19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-434I01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-400P15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-084F11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-335H15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-296A07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-447K19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-292P02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-274H16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-535E01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-505L15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-423A08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-291D01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-430G24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-121A01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-294K20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-343F14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-491H03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-187A13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-121C10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-109B11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-356G06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-517C01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-369F05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-518L21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-491C19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-536H06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-122L03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-344I04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-367A05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-297O03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-318D10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-536G23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-344I03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-169G24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-047L18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-412C01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-429K14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-090L19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-269F08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-445O13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-452E11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-089G17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-218N15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-138O09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-375P09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-141E21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513C23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-048B03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-456C24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-118N22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-047O03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-445P06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-066G06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-218N16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-260H06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-534E18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-439K20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-479K19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-159L15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-063C03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-088G17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-069K18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-323E02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-122D16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-128B07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-190K10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-057G07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-099D21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-080H20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-014O06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-312A24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-176G18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-209D19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-056J02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-261E06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-056A06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-148H17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-103J04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-007B09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-002O23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-232J12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-159P16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-144I10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-270L11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-338A05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-273J12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-173M22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-020B07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-295A18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-001M07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-225M17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-036D14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-055M06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-155N09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-250I19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-116C14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-296M01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-125I01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-291N08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-347P16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-062C16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-056I20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-042N02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-190D17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-305F14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-257D07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-193J17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-208J22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-011A23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-211O12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-051L01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-164E07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-149K03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-338L02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-237I23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-043I24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-079M09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-123D14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-324C05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-348E08
singlet/doublet
singlet
plural/unique
unique
