BAC Information

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BAC

Clone NameMSMg01-272A03
ChromosomeX (Build37)
Map Location 158,989,514 - 158,989,803
singlet/doubletsinglet
Overlap geneReps2
Upstream geneRai2, Gm47, Nhs
Downstream geneLOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610, EG637051, Grpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272A03.T7 (MSMg01no272_a03.b1)MSMg01-272A03.TJ (MSMg01no272_a03.g1)
ACCAG411405AG411406
length741741
length of high quality
(start - end)
331 (46 - 376)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no272_a03.b1 PHD_FILE: MSMg01no272_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:02 2005CHROMAT_FILE: MSMg01no272_a03.g1 PHD_FILE: MSMg01no272_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATCAGACCTTCAAAGAAGATCTAATCCCGGTTCTTCACAAACTA
TTCCACAAAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAGC
CACAATTACTCTGATACCTAAACCACAAAAAGACCCAACAAAGATAGAGA
ACTTCAGACCAATTTCCCTTATGAATATCGATGCAAAAATTCTCAATAAA
GTTCTCGCTAACCGAATCCAAGAACACATCAAAACAATCATCCACCCTGA
CCAAGTTGGTTTCATCCCAGGGATGCAAGGATGGTTCAATATACAGAAAT
CCATCAACGTAATCCAGTATATAAACCAACTCACAGACAAAAAACACATG
ATCATCTCGTTAGATGCAGAGAAAGCATCTGACAAAATCCAACACCCATT
CATGATAAAAGTCTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACA
TGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGT
GAGAAGCTGGAAGAAATCCCACTAAAATCAGGGACTAGACAAGGCTGTCC
ACTCTCTCCCTACCGATTCAACATTGTACTTGAAGTCCTAGCCAGAGCAA
TTAGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAAGAAGTC
AAAATATCACTTTTTGCAGATGATATGATAGTATAAGTGAC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGCAGCACCTTGTTCTTCAGTG
GTTCACATCTCTAGTTTCAGATATGACCTGTTTAATGTATTCCAGAGTAG
AATGCCCTATAGCCCCCTGCCCAATTTGTGTGATATGATGGAAATGGCTC
AGTTTCTGCAGGATTTTGCTGTATTAGAAAAAAAGCAATGACTTTTAGAG
GGCCACAGAAATAAAATGATATTCTAGGCTGAAGTAAAGAGAAGCTGTCC
TTTTGCTGAGAGAAGCAGGTAGGATGCTATGAAAAGAGCTTTTGCTTAGA
ACCAGAAGGTTGGGATTGTTTATTGCCCCCGCCTGACTTTAGGCAAACCA
TTGAGCTTCTATGAACCATATTTTTTTTCTTTTTAAAACAGTGATGAGGG
TGTTAAGATGATTTACTGGAAATATGAATGTAAACTCATCTGGAAATTAC
ATCCTATTCAATGCAAGATAGTGTTCCTAATAGATAATTTAAAAATTCTC
CTGAAAATCATCTGTCTCATTGATGTATGAAACTGCACAGGGGTCAGACT
TCACTTTCCTCTTGTACTTTCCCTTGTATTATTTTCCTTTTTAAAAAGAA
GTATAGCTGTTGCTTCTATTTCAAATCTAATTTGGGCTTGGAAATTAATG
CTTAGTCCACAGGTAAGTCCATCTGTGTTCTAGTAAGTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_a03.g1 MSMg01no272_a03.g1 CHROMAT_FILE:
MSMg01no272_a03.g1 PHD_FILE: MSMg01no272_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:02 2005
         (290 letters)



>mm_chrX_158989314_158990003
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgcagcaccttgttcttcagtggttcacatctctagtttcagatatgacctgtttaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 actgcagcaccttgttcttcagtggttcacatctctagtttcagatatgacctgtttaat 431

                                                                       
Query: 61  gtattccagagtagaatgccctatagccccctgcccaatttgtgtgatatgatggaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gtattccagagtagaatgccctatagccccctgcccaatttgtgtgatatgatggaaatg 371

                                                                       
Query: 121 gctcagtttctgcaggattttgctgtattagaaaaaaagcaatgacttttagagggccac 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 370 gctcagtttctgcaggattttgctgtattagaaaaaaagtaatgacttttagagggccac 311

                                                                       
Query: 181 agaaataaaatgatattctaggctgaagtaaagagaagctgtccttttgctgagagaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agaaataaaatgatattctaggctgaagtaaagagaagctgtccttttgctgagagaagc 251

                                                             
Query: 241 aggtaggatgctatgaaaagagcttttgcttagaaccagaaggttgggat 290
           |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 250 aggtaggatgctatgaaaagagcttttggttagaaccagaaggttgggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)