BAC Information

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BAC

Clone NameMSMg01-272F07
ChromosomeX (Build37)
Map Location 35,892,510 - 35,893,036
singlet/doubletsinglet
Overlap geneCul4b
Upstream geneRhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495
Downstream geneMcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171, LOC670539, LOC100039700, 1700085A12Rik, LOC100039715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272F07.T7 (MSMg01no272_f07.b1)MSMg01-272F07.TJ (MSMg01no272_f07.g1)
ACCAG411646AG411647
length755770
length of high quality
(start - end)
690 (61 - 750)293 (65 - 357)
definitionCHROMAT_FILE: MSMg01no272_f07.b1 PHD_FILE: MSMg01no272_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:27 2005CHROMAT_FILE: MSMg01no272_f07.g1 PHD_FILE: MSMg01no272_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTT
TAGATGACATCAAGCATGCTACTGGGATAGGTTTGTATTGTGTTGTTTGT
CTAGTAGCAAGCAGTTCGTAGTTCTCTAGTCTGTGCAGTCACTGATCAGA
GCTCTGAACATAAAAGGACATGATCCTCTCCTCTGAACTTAAAAAAAAAA
AGATTTGTTTTTTTGTTGTTGTTTTTTGTTTTTTTGTATATAGCCTGTGT
GTGTATATGTATACCACACATGTGCAGGGATCTGTGGGGTCTAGAACGGG
GCATTGTATCTCCTGGAACTTGAGTTAGGTGTTTGCGAGTCACCATGTTA
GGTGCTGGTAACTGACCCTTATTCCTCTAAAAGACCAGACACTACTCTTG
AATGGTGAGCTAGCTCTCCAGCCCCCTCCTCTGTATTGGCAATGATAGAA
CTAGCCACCTGGACTGTGAGAAGGTTCTAGTCTAGAAGCTATGAAGATAA
TTCTGACATAAACTCCTAAAAGAGACTTCTGGTAGAATGTTTTCAGCAGC
AATGAAATTACTAGAGATACAGCACAGTGAAGGAGAATGAAGACATAAGG
TGATGCTAGGCTTTTCATAGGATTAGGTTAGTGTTACCATCATTAGCAAT
GAAGCAGAAGGTTAATGGAGAATATCAACAAACTCAAGTGATAGTAAAAC
AGCCAAGTTGAGTGTCCTTTTAGTGATTGACTTGAGAGAAAGGAAATGTT
TTGGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTATTCCCGAAATTCATTGGGGTTTTTAATTCCATCTTCATTTCAGCT
TGAGTCCTCTTCAATGCCTCCATCTCCTCAATGAATTCTGTTCTCAAGTC
CTGTATTGTCTTTGTCATTTCCATCAGCCTTATGATTGTGTTTTTCAGGT
ATCACTCATTTATTCTCCTTAAGCTATTTCTCCTTAATTTCATTGAACTA
TCCCTTCCTGTCTTCTTTAAACTCCCTGAGTTCTTTGATGAAGTTTACAA
GTGTTCTTAAATACTATGCTCTGGGTCCATCTAGAAAATTGTCATTGGCA
AATATTTCNATAATTACCCCCCCCCCCCCCCCATACTGTTGGTATTTTTG
TGATGAAATCTGGCCACATGGAATAAAATAAGATAATTCCCATTCTGATA
GTGACAGAGCAAGTTGTGTCAATAGAGAGGAAATATAGGCAGGCTAGGCC
TAGAAGTTGGAAATAGCTGGGGTGGAACGACGTCAGATGGACAGAGGGGA
CTGGACTGGTGTACAAGATGTGCTTCCTGGTCCAATCGTGGAGTGTGGTT
ATAGATCTGGATGGTTGGAAAGGTTGTCTATGACATGATAACGCTCTGTT
GATCTCCATAATTAAAAATGGATCTTCTCCACAATATAAATAATATTTTG
TGGTATAATGTATATATAACTATATAATTCTATATTAATTATTTACTTTG
TTAATAATACTTTTTTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_f07.b1 MSMg01no272_f07.b1 CHROMAT_FILE:
MSMg01no272_f07.b1 PHD_FILE: MSMg01no272_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:27 2005
         (690 letters)



>mm_chrX_35891945_35893036
          Length = 1092

 Score =  969 bits (501), Expect = 0.0
 Identities = 520/527 (98%), Gaps = 2/527 (0%)
 Strand = Plus / Minus

                                                                        
Query: 166  ttgtttttttgtatatagcctgtgtgtgtatatgtataccacacatgtgcagggatctgt 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 ttgtttttttgtatatagcctgtgtgtgtatatgtataccacacatgtgcagggatctgt 1033

                                                                        
Query: 226  ggggtctagaacggggcattgtatctcctggaacttgagttaggtgtttgcgagtcacca 285
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 ggagtctagaacggggcattgtatctcctggaacttgagttaggtgtttgcgagtcacca 973

                                                                        
Query: 286  tgttaggtgctggtaactgacccttattcctctaaaagaccagacactactcttgaatgg 345
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972  tgttaggtgctgggaactgacccttattcctctaaaagaccagacactactcttgaatgg 913

                                                                        
Query: 346  tgagctagctctccagccccctcctctgtattggcaatgatagaactagccacctggact 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  tgagctagctctccagccccctcctctgtattggcaatgatagaactagccacctggact 853

                                                                        
Query: 406  gtgagaaggttctagtctagaagctatgaagataattctgacataaactcctaaaagaga 465
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852  gtgagaagattctagtctagaagctatgaagataattctgacataaactcctaaaagaga 793

                                                                        
Query: 466  cttctggtagaatgttttcagcagcaatgaaattactagagatacagcacagtgaaggag 525
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792  cttctggtagaatgtttccagcagcaatgaaattactagagatacagcacagtgaaggag 733

                                                                        
Query: 526  aatgaagac--ataaggtgatgctaggcttttcataggattaggttagtgttaccatcat 583
            |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732  aatgaagacttataaggtgatgctaggcttttcataggattaggttagtgttaccatcat 673

                                                                        
Query: 584  tagcaatgaagcagaaggttaatggagaatatcaacaaactcaagtgatagtaaaacagc 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 672  tagcaatgaagcagaaggttaatggagaatatcaacaaactcaagtgatagtacaacagc 613

                                                           
Query: 644  caagttgagtgtccttttagtgattgacttgagagaaaggaaatgtt 690
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612  caagttgagtgtccttttagtgattgacttgagagaaaggaaatgtt 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1092
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1082
Effective search space:   735760
Effective search space used:   735760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)