BAC Information

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BAC

Clone NameMSMg01-272I21
ChromosomeX (Build37)
Map Location 134,425,353 - 134,553,866
singlet/doubletdoublet
Overlap geneIl1rapl2
Upstream gene1700014N06Rik, LOC621984, LOC100034363, 4930488E11Rik, LOC666244, 2810402A17Rik, Zcchc18, BC031748, LOC666277, LOC436231, LOC666288, LOC100041260, LOC100041272, LOC669737, Esx1, EG666303
Downstream gene1700025D03Rik, Nrk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272I21.T7 (MSMg01no272_i21.b1)MSMg01-272I21.TJ (MSMg01no272_i21.g1)
ACCAG411805AG411806
length728734
length of high quality
(start - end)		295 (70 - 364)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no272_i21.b1 PHD_FILE: MSMg01no272_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:44 2005CHROMAT_FILE: MSMg01no272_i21.g1 PHD_FILE: MSMg01no272_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,553,575 - 134,553,866)(134,425,353 - 134,425,637)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGA
ATTCAGTGGATTACATAGACAATGTCCCTGTTATTATGAAGAGTAAATTA
CATCAAAGAACATAGACAATACCCAAAATAAGAATTAATCATATAGAATT
TCAGGAAGTGATAACAGATAGGCAGGAAAATAGACTAAGTTGAGGTCCCA
GAACAGGATGGTACAATTATAAATGTGTTCAGGGAAGAATACTGGTAATA
CTACATTTAAACAGAATAAAGAATGTTACTGAAGAATGTAGCTTAGTTGT
TAGAGTGCTTGCCTCTCATGTTTGTTTACTTCTAAGATTAATCCTTAACA
CTGTATAAAGATTTTTTTAATCACCGCCTAGCCCTAATCCTAGCACTGGG
GAAGTAGATCAGCTACATTCTGAGTTTTAGAGGTGGGAGTGTGAATGTGA
AGGAAAAATTCAAACGGTTTAGACAACAAACTTTTTTAAAGAAACAATAT
TTATGCAACATTTATATGCCAGGAAAGATTAGGGAAAGTGATACAGAACA
AATAAAATCTAGGCTCTCTCTGCCAAGGGTTTAGAGTTAAGTAGGGTACA
CTTGTACATGCTGGGATAGGGTAGGGGCTGAGGAGATGAGGGGGGTAAGA
GTTTTTTTTTTTTTTTTTTCTTTTTTNCTNTTTTTTTTTTTTTNTTTTTT
TTTCCCNCTTCTTTTCTCTTCTTTTTTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGTGGTTTATACTTTGTTTTTT
GAAATTAATATTTGATTTTATGGCAGTATATTATTTAATATATATTTATT
TAAGATATATCAGCTATAAGTAGCATCTCTATACAGTGGAGGTGATTTTT
TTTGTTTGTTTTATTACTTGGAATTCTCTGGGTAATTTATAAATGTCTGG
TGATCTCCCAAACTACATTTATTGTCGCCACCCCTGTAAAATTTTCATTT
GCTTCCTTAAACTAAATTACATTTACATTTTTAGACTAAAAGCCGCTTTT
CTTATCAAGTATTATTTTTTTGATCCCCCCCCCACATAGCAAGAAATAAG
AAAAAATAAGTGTAAGATAACAAAGACTTTAAACAAATGTCATTAGATTT
AACTGTAGATGTAATGGTTGAATTTGTTGATTAAATTTATCGTTTTACAA
CGGCTTTGGATTATGTCTTCCATAATCCAAAGGTTTCTATATTTATTGGT
TACTAGAAATACAAAAATAAAGAAAACATGATCCTTTCCACAAAGAATCT
TTCTCCCCTTTCTTTACAGATGAGAACTCTGGGGTAGAAAGATTTAAGTG
AATTTGCCCAAAGCTACACAGTAGATAACAGAAATGAGACTCTAACCTAT
TTTCTTCCATTTAAATTCCATAAGAAGTAATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_i21.b1 MSMg01no272_i21.b1 CHROMAT_FILE:
MSMg01no272_i21.b1 PHD_FILE: MSMg01no272_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:44 2005
         (295 letters)



>mm_chrX_134553453_134554147
          Length = 695

 Score =  511 bits (264), Expect = e-149
 Identities = 285/292 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatgtccctgttattatgaagagtaaattacatcaaagaacatagacaatacccaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 414 caatgtccctgttattatgaagagtaaattacatcaaagaacatagacaataaacaaaat 355

                                                                       
Query: 61  aagaattaatcatatagaatttcaggaagtgataacagataggcaggaaaatagactaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aagaattaatcatatagaatttcaggaagtgataacagataggcaggaaaatagactaag 295

                                                                       
Query: 121 ttgaggtcccagaacaggatggtacaattataaatgtgttcagggaagaatactggtaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttgaggtcccagaacaggatggtacaattataaatgtgttcagggaagaatactggtaat 235

                                                                       
Query: 181 actacatttaaacagaataaagaatgttactgaagaatgtagcttagttgttagagtgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 234 actacatttaaacagaataaagaatgttactgaagaatgtagcttagttgttaaagtgct 175

                                                               
Query: 241 tgcctctcatgtttgtttacttctaagattaatccttaacactgtataaaga 292
           |||||||||||  ||  |||||||||||||||||||||||||||||||||||
Sbjct: 174 tgcctctcatgcatgaatacttctaagattaatccttaacactgtataaaga 123


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no272_i21.g1 MSMg01no272_i21.g1 CHROMAT_FILE:
MSMg01no272_i21.g1 PHD_FILE: MSMg01no272_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:44 2005
         (287 letters)



>mm_chrX_134425153_134425839
          Length = 687

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgtggtttatactttgttttttgaaattaatatttgattttatggcagtatattattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgtggtttatactttgttttttgaaattaatatttgattttatggcagtatattattt 260

                                                                       
Query: 61  aatatatatttatttaagatatatcagctataagtagcatctctatacagtggaggtgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatatatttatttaagatatatcagctataagtagcatctctatacagtggaggtgat 320

                                                                       
Query: 121 tttttttgtttgttttattacttggaattctctgggtaatttataaatgtctggtgatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttttgtttgttttattacttggaattctctgggtaatttataaatgtctggtgatct 380

                                                                       
Query: 181 cccaaactacatttattgtcgccacccctgtaaaattttcatttgcttccttaaactaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccaaactacatttattgtcgccacccctgtaaaattttcatttgcttccttaaactaaa 440

                                                        
Query: 241 ttacatttacatttttagactaaaagccgcttttcttatcaagta 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacatttacatttttagactaaaagccgcttttcttatcaagta 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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