BAC Information

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BAC

Clone NameMSMg01-273G01
ChromosomeX (Build37)
Map Location 75,830,545 - 75,830,860
singlet/doubletsinglet
Overlap genenone
Upstream geneTbl1x, EG628893, LOC667606, Prkx, Pbsn, OTTMUSG00000017866, LOC100042001, 5430402E10Rik, LOC628976, Obp1a, EG546335, EG628991, LOC236874, EG667658, 4930480E11Rik, EG667672, Prrg1
Downstream geneLOC667679, LOC667684, 4921509A18Rik, LOC667700, EG546337, EG629116, LOC636082, EG667736, LOC100041373, EG636104
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273G01.T7 (MSMg01no273_g01.b1)MSMg01-273G01.TJ (MSMg01no273_g01.g1)
ACCAG412394AG412395
length743742
length of high quality
(start - end)
320 (40 - 359)289 (68 - 356)
definitionCHROMAT_FILE: MSMg01no273_g01.b1 PHD_FILE: MSMg01no273_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:44 2005CHROMAT_FILE: MSMg01no273_g01.g1 PHD_FILE: MSMg01no273_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TCCACATATCTTCCTCTATAAGAGGTGTAAAAATCAACTTTATTGACCTA
TTGTATTTTTAAAGTACCTTCTTTACAGGGAATGTTTTACTAATGAAATG
AATAGGATAAAGTTACATTTTCAGTCACTTAAAGATTCATTCTGCAAAAC
TTGCCAGCACACCTTTCAGCAAAAATTACTCCCTACAATCCCCCTAAGCT
TATTTTTCAAATGTAAAGTAGAAGTGAATTCAAGAAAGTCTACTTTGTAA
AATACATAGATAGAAGAACCACAAAGCTAATAGGAGGAATTTCAGTATAT
TTAGATCTTTATTGACACCCCCCCCCTGCCCCATAAAATGTTTCAGTCAT
GCTGGGTGGTTGTGGCACAAAACTTTAATCCGAGCACTTAGGAGAAAGAG
GCAGGTTGATCTCTGAGTTCAAAGGTAGCCTGGTCTACAGAGTGAGTTTC
AGGACAGCCAGGCCTATACCAAAAAATGCTGTCTCAAAAAAAACAAAATA
ATACAAAAAAAAAAACAAAAAACAAAAACAAAAACAGGAACAACAACAAC
AACAACAACAACAAAAAACCCTAAATAAATAAATAAAGTTCCAACCACAA
CTAAAGTACTTATTGGGAAGGGCCAACTAGTGTCGCCCTAATTCCGTCAT
GACTAAAGTTAAAGAAAGAAAGAAAGGAAGAAACGATGACCGA
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTAATGGGG
TTATTTGAATTTCTGCAGTCCAGTTTCTTGAGTTCTTTGTATATATTGGA
TATAGCGGTCTCCTGTGAGGCTATGCCAGTGCCTGGAAAATACAAAAGTC
GATGCTCACAGTCATCTATAGGATGGAATACAGGACCCTCAATGTAGGAG
CTAGAGAAAGTACCCAAGGAGCTGAAGGGGTCTGCAGCCCTATAGGTGGA
ACAACAATATGAACTAACCAGTACCCCCAAGAGCTCGTGTCTCTAGCTGC
ATATGTTTATTAACATCGCCTCACCCGGCCAGCATTGGGCAGAGAGGCCC
CTAGGTCCTACAAACTTTATATGCCTCAGTACAGGGGAACGCCAGGGCCA
AGAAGTGGAAGTGGGTGGGTAGGGGAGCAGGGCGGGGTGAGGGTATAGGG
AACTTCCAGGATAGCATTTGAAATGTAAATAAAGAAAATATCTAATTAAA
AAAAAAGACTTGAAAGATATGCTCGGCACTCTAAAGAAAGCAACTATTTT
ACTGACAAGCAAAGTTCTTCCTGAGACCGTTGCCCCTATATAGCTTCCTA
TTCCACTTTTAAGAAAGAATGCTCAAACGAGGAATCAAATCTACATGTCG
CCTGAATTCTTATTATGTCTTTTCCTTGGAATGCCATGATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_g01.b1 MSMg01no273_g01.b1 CHROMAT_FILE:
MSMg01no273_g01.b1 PHD_FILE: MSMg01no273_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:44 2005
         (320 letters)



>mm_chrX_75830341_75831060
          Length = 720

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctccacatatcttcctctataagaggtgtaaaaatcaactttattgacctattg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattcctccacatatcttcctctataagaggtgtaaaaatcaactttattgacctattg 461

                                                                       
Query: 65  tatttttaaagtaccttctttacagggaatgttttactaatgaaatgaataggataaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tatttttaaagtaccttctttacagggaatgttttactaatgaaatgaataggataaagt 401

                                                                       
Query: 125 tacattttcagtcacttaaagattcattctgcaaaacttgccagcacacctttcagcaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tacattttcagtcacttaaagattcattctgcaaaacttgccagcacacctttcagcaaa 341

                                                                       
Query: 185 aattactccctacaatccccctaagcttatttttcaaatgtaaagtagaagtgaattcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aattactccctacaatccccctaagcttatttttcaaatgtaaagtagaagtgaattcaa 281

                                                                       
Query: 245 gaaagtctactttgtaaaatacatagatagaagaaccacaaagctaataggaggaatttc 304
           ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 280 gaaagtctactttataaaatacatagatggaagaaccacaaagctaataggaggaatttc 221

                           
Query: 305 agtatatttagatctt 320
           ||||||||||||||||
Sbjct: 220 agtatatttagatctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)