BAC Information

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BAC

Clone NameMSMg01-273H17
ChromosomeX (Build37)
Map Location 54,332,289 - 54,490,220
singlet/doubletdoublet
Overlap geneVgll1, Cd40lg, Arhgef6
Upstream geneLOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1
Downstream geneRbmx, Snord61, Gm364, Gpr101, Aldoa-ps, EG666441, LOC666447, Zic3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273H17.T7 (MSMg01no273_h17.b1)MSMg01-273H17.TJ (MSMg01no273_h17.g1)
ACCAG412470AG412471
length733731
length of high quality
(start - end)
298 (386 - 683)281 (434 - 714)
definitionCHROMAT_FILE: MSMg01no273_h17.b1 PHD_FILE: MSMg01no273_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:52 2005CHROMAT_FILE: MSMg01no273_h17.g1 PHD_FILE: MSMg01no273_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,332,289 - 54,332,586)(54,489,940 - 54,490,220)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTCATTTCTCATCCCCTCTGACCACTGATGATACTAGGCCAGAGACCA
CACTTTGCAAAACACTCACAACCCGGAAGGAACCAATCCTTTTATGATAG
GAAAACTTCATAGGAAATGTATGTGACTGCAGGCCATCATTGGGAAGAAC
CACAAGGGCTTTTTTTCTGTTTCTTTAGATGGCATCTGAAGGGAAATTGA
TCATATGATGATCTACACTGATTGCTAACAAAATGATAAGGAACACATCA
ATTCTGTTACCAACCATCCCTTAGAAATGTTGAATTTTAGTAATAATATA
GTCTTAAGGAATGTTTTAGTTTTGCCACACCCCCATAAGGAAAGTTTAAA
TGACAGTAGGTTACTTTTGTACTATGAATTTAGAGTCTATGGCTCCTACA
TCATTTATGAAGGAGAAAAGAGGAGCACAGGTGGTTTTCATTTCCTATCA
TAAAATATGATAGATTATTAATCAACATTCCAGAAATATAGCCACTCTTT
ATCCTCTGGGAAAGAAACCATCACTGCATTAATAGCATCAGGCTCTACCC
ATCTGAGGAAGAGGCTTTTACTGTGCCTCCCTGTTGGCTGACATTCTTTG
GTTTAATTTTTAGATTCAGCCAGGCCCAGCGGTGGTATTAGTCTCCCTGG
AGGTTTGCACAGATGAACAGTTTTCATGCAGAT
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCAGTGATCATGGGATGTGCTGTGTGACTC
TTGGAGGCATGCAGAGACTGCGCGATCAGTGATGAGCTCTTTGCTCTGGG
AAAGGGAAAACAGAAAAGTCTGGGACTCCTACCACATCAGTTCCCCTTCT
TGAAGACAAAATAAGGTCATTTGGTCATTTAGAGTCCCCTATCGGGAAAT
GTAAAAGTGGCATGCTTGCCTTTTGAGTACAAGGGCATGAAGAATGTCTC
TGCTGTAACTACAATAGATTGGAACAAATACCTAGGTCTGCCTCTGATAA
CTCCCTACTTTGTTTTACTGCANNGCGANACCACTTACAGGTACTCGTAA
AGATTCTGTTCCACAAGTTCTACTCCACAGAGGAAGAGAAACTCATTATT
GAAGAAACCAGAAGTAATGGGCAGACCATCATTGAAGAGAAGTGAGTAGA
GAGTGTTGCTTTCTTGACATGTCTGGGGCCTAAAGTAGGCATGACATCCT
GTCTTAGGGCTTCTGTTGCTGTAATAAAACACTATAACCATGAACAAGTT
GGAGGAAGAAACTGTTTATCTCAGCTTACAACTCTCAGGTCACTCTCCAA
CGTCTAGGGAAGCCAGGGCAGGAACTCAAACAAGGGTGGAACTTGGAGGT
AGGAGCTGATGCAAAGGTCGTGGAGGGATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_h17.b1 MSMg01no273_h17.b1 CHROMAT_FILE:
MSMg01no273_h17.b1 PHD_FILE: MSMg01no273_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:52 2005
         (298 letters)



>mm_chrX_54332089_54332786
          Length = 698

 Score =  569 bits (294), Expect = e-166
 Identities = 297/298 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaggaaagtttaaatgacagtaggttacttttgtactatgaatttagagtctatggctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaggaaagtttaaatgacagtaggttacttttgtactatgaatttagagtctatggctc 260

                                                                       
Query: 61  ctacatcatttatgaaggagaaaagaggagcacaggtggttttcatttcctatcataaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ctacatcatttatgaaggagaaaagaggagcacaggtggttttcatttcctatcatagaa 320

                                                                       
Query: 121 tatgatagattattaatcaacattccagaaatatagccactctttatcctctgggaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgatagattattaatcaacattccagaaatatagccactctttatcctctgggaaaga 380

                                                                       
Query: 181 aaccatcactgcattaatagcatcaggctctacccatctgaggaagaggcttttactgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaccatcactgcattaatagcatcaggctctacccatctgaggaagaggcttttactgtg 440

                                                                     
Query: 241 cctccctgttggctgacattctttggtttaatttttagattcagccaggcccagcggt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctccctgttggctgacattctttggtttaatttttagattcagccaggcccagcggt 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no273_h17.g1 MSMg01no273_h17.g1 CHROMAT_FILE:
MSMg01no273_h17.g1 PHD_FILE: MSMg01no273_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:52 2005
         (281 letters)



>mm_chrX_54489901_54490581
          Length = 681

 Score =  528 bits (273), Expect = e-154
 Identities = 279/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagagaaactcattattgaagaaaccagaagtaatgggcagaccatcattgaagagaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aagagaaactcattattgaagaaaccagaagtaatgggcagaccatcattgaagagaagt 261

                                                                       
Query: 61  gagtagagagtgttgctttcttgacatgtctggggcctaaagtaggcatgacatcctgtc 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gagtagagaatgttgctttcttgacatgtctggggcctaaagtaggcatgacatcctgtc 201

                                                                       
Query: 121 ttagggcttctgttgctgtaataaaacactataaccatgaacaagttggaggaagaaact 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ttagggcttctgttgctataataaaacactataaccatgaacaagttggaggaagaaact 141

                                                                       
Query: 181 gtttatctcagcttacaactctcaggtcactctccaacgtctagggaagccagggcagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 gtttatctcagcttacaactctcaggtcactctccaacgtctagggaagccagggcagga 81

                                                    
Query: 241 actcaaacaagggtggaacttggaggtaggagctgatgcaa 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  actcaaacaagggtggaacttggaggtaggagctgatgcaa 40


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)