BAC Information

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BAC

Clone NameMSMg01-273N09
ChromosomeX (Build37)
Map Location 14,550,527 - 14,550,837
singlet/doubletsinglet
Overlap genenone
Upstream geneEG385328, LOC668991
Downstream gene4930403L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273N09.T7 (MSMg01no273_n09.b1)MSMg01-273N09.TJ (MSMg01no273_n09.g1)
ACCAG412732AG412733
length735729
length of high quality
(start - end)
166 (41 - 206)311 (373 - 683)
definitionCHROMAT_FILE: MSMg01no273_n09.b1 PHD_FILE: MSMg01no273_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:17 2005CHROMAT_FILE: MSMg01no273_n09.g1 PHD_FILE: MSMg01no273_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CCTCACCTCAACCACCAAGACCTAGGAATTTCAAATGTACACCTAAGAAA
AAGTTTTTCTCCCAAACCTACTTAACTTTCTTTCCTTCTTCTAATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATA
TAGATAGATGGAGAGAGAGGGAGGGAGGGGTGGGAGGGAGAGGGGGTCAG
AGGGGTGCATGTGAGAATGCTAGATCTGTGGGGGGTGGGGGGGGGGGAGG
GGGGGGGTATGCGCGCGAGTGTGTGGGGGAGTGGGGGGGGGGGGTGTGTG
GGGAATATGTTCTTTTTGGCACCCCCCCCCCCCCNTCTNNTCCCCATTTC
CTTTGGTTACCCAGAGAGGTGCCAAAACAAAGAGAGGAGGAGGGGGGTGG
GGGTGTCACTGGAGCTGTTAGTGGTTCAGCGCGTGCGAGTCTCGTGGTTT
GTGAGCAAGCCAGGGTGGGGGAGAGTGGGTCTGTGAGCATGCCTGCGAGG
GGCTGGGGCAGGGGGAGTCGAGCGTTGCGGGGTAGGAGTCGGGTTGGGTG
GTTTAAAGTGGGTAATGGGAGAGGAGGGGGGGGGGGTGGGGGGGTGTGGT
GGCGGGGGTGGGGTTGGGGGGGGCGCCCCTTGCGGCGGTGGGCGGGTGGT
TCCGGTGGGCCTCTCCCCGGGGGGGGGGGGGGGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTTGTCAGTTTTAAATTTGATTCCTAAACCCT
CTGTCATGAAACTTTTACTATTATCTCAACCAACTTGAGGTAACTGAACC
CAGCAAGTTTGAACTTCACAAGAACAAGAAGTAAAGTTCTGTTTCAGGCA
AAATATGTGTTTGTATTTATATGTTCTATAAGCTAGGGTTAACTCAATCA
AAACATGCCCCTCCTGAGAAAAGTTGTTTGGCTTGTCTACACCTCAGGTA
AGGTTTGGTCTTGTAATCACAACACTCTGAAGGTCTAGGTAAGAGATTGC
AAGTTCAATTCTGCCTGGGCCACCTTGCAAAATTTTGTATCAAAAAATTT
CACAACAAAAGCTGTGACAATAACTGAGTTCCTTAAAAACCTTTGGAACT
CATATATGTATTATCTTTGTATACATGTAATAATTATTCATGAGATCTTC
CATATAGTAAGAATTTATTAATATCTCTTTTAAAATGGCAAATATCTGAA
TTTTAAGAAGTGTCAATTTCTTAAGGAGTTTGAAGAATCATTCATGTATT
AAGGCCTAAATTGTGGTTTATTGACAAATGGACAAGCTGATTTCCAGACT
GGTTGTACCAGCTTTCAATCCCACCAGCAATGTGTTGCTCTTTTTCACAT
CCTGGCCAGCATCTGCTGTCACCTGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_n09.g1 MSMg01no273_n09.g1 CHROMAT_FILE:
MSMg01no273_n09.g1 PHD_FILE: MSMg01no273_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:17 2005
         (311 letters)



>mm_chrX_14550327_14551037
          Length = 711

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttgcaaaattttgtatcaaaaaatttcacaacaaaagctgtgacaataactgagttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttgcaaaattttgtatcaaaaaatttcacaacaaaagctgtgacaataactgagttcc 260

                                                                       
Query: 61  ttaaaaacctttggaactcatatatgtattatctttgtatacatgtaataattattcatg 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaaaacctttggaactcatatatgtgttatctttgtatacatgtaataattattcatg 320

                                                                       
Query: 121 agatcttccatatagtaagaatttattaatatctcttttaaaatggcaaatatctgaatt 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatcttccatatagtaaaaatttattaatatctcttttaaaatggcaaatatctgaatt 380

                                                                       
Query: 181 ttaagaagtgtcaatttcttaaggagtttgaagaatcattcatgtattaaggcctaaatt 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 ttaagaagtgtcaatttcttaaggagtttgaagagtcattcatgtattaaggcctaaatt 440

                                                                       
Query: 241 gtggtttattgacaaatggacaagctgatttccagactggttgtaccagctttcaatccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggtttattgacaaatggacaagctgatttccagactggttgtaccagctttcaatccc 500

                      
Query: 301 accagcaatgt 311
           |||||||||||
Sbjct: 501 accagcaatgt 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)