BAC Information

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BAC

Clone NameMSMg01-273O21
ChromosomeX (Build37)
Map Location 83,748,915 - 83,749,203
singlet/doubletsinglet
Overlap genenone
Upstream geneMap3k7ip3, Gyk, LOC100042350, LOC629340, LOC100041562, 5430427O19Rik, 1700072E05Rik, Nr0b1, CN716893, LOC667841, LOC236427, EG667852, EG436212, Gm41, EG629374, EG637027
Downstream geneIl1rapl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273O21.T7 (MSMg01no273_o21.b1)MSMg01-273O21.TJ (MSMg01no273_o21.g1)
ACCAG412801AG412802
length722736
length of high quality
(start - end)
74 (48 - 121)287 (69 - 355)
definitionCHROMAT_FILE: MSMg01no273_o21.b1 PHD_FILE: MSMg01no273_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:23 2005CHROMAT_FILE: MSMg01no273_o21.g1 PHD_FILE: MSMg01no273_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAACCTAGGTCTTCAGAACTGCTAAGGAAATCTAGCTGTACAAC
ATATTTTCCCCCACTTTCTGATTTTACAAGTAGTTTGGGAGAATATAAAA
GCCTCAGGCTATGATTCCTTCTGACTCATCTAANNNNAGGGCTACCTTAA
ACCTCCAGGTACCTCCTTCATATGGCTTGCTCTGATTCCCAAATGCTGGG
CTTANATACTCTGAGCATCACAGTATTTAAGGCTCCCATTGATTCCCAAG
CCGGGCCTTTACCTCCTCAAACCCTCCAGTATCCCTTTCTAAGGAACCCC
CAAAACCCTTTTGATGGTCCCCCCCCACCCCCAACCTAATAAGGTTTTCA
CTTCAGGGTCCCCCTGANNTCAAGAAAAAAAAAATANNNNNNNNNNNNTN
NNNTCCCCTGCTNNNNNNACTGGACCCCGCGGGGGGGGGGGTGGGGGGGG
GGGGGCGGGGGGGGGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNAAAGA
AAGAGGAAAAGGGAATTCCGTNNNNNCCCCCCCNNCNNNNNNNNNCAGTG
GTTGGTTTTNATAANANCGNTTTTTCCCCCCCATTATTTCCCCACAGGGG
TGTTCGGCCCCCCTGNNNNNNNNNANNAAGGTTTTTTTGGGTTGTTGGGT
GGGGGCTGGGGGCGGGTGGGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAGATGTATACCAAGCTGGCCTTGAACTCACA
GGAATATACCTGTCTCTACCTCCAGAGCTCTGGGATTAAATGACTGAGCC
AAGGCTCCAGTTGACTGTTTTTAATATTGTTTATCCAAGAGTGGAAATTA
TTATGGCTTTGACAGGAACCAATTTTCAGCATGGAGTCTGGATTCGAATC
TGATGTTTCATTCATGTACTCCCTCCCTGTTTGTATTCTGAGACTTTTGT
CTTTTCACATGCACAGTAGGGATCATAGCTACTTCTTTTTTTTGGGGGGG
GGGTTCTATTTTTGGCCCCTCTCGCCCAGCCCTGGCTGTCCTGGAACTCA
CTCTGTAGACCAGGCTAGCCTCAAACTCAAAAAACCACCTGCCTCTGCCT
CCCCAGTGCTGGGATTAAAGGCATGTGCCACCATGCTGGGCTAATAGCTA
CTTCTTAAGGGTCATTGTTGGTTTAAGTAAAACTATACACACACACATGC
AGACACACAAACACAAACTGTTATACCTAGTAAATGTATAATACAGTTCC
TAATTATCCATGTCTTCCATATCACATATAGTTTTCTACTTTTATTTGCA
GACTTCAGAGGCTATGATATTTAAGGATGTTGGCAATTAACAAAAATGAA
AAACTTATTTAAAAATGAAAAACTCAAGCCTTCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_o21.g1 MSMg01no273_o21.g1 CHROMAT_FILE:
MSMg01no273_o21.g1 PHD_FILE: MSMg01no273_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:24 2005
         (287 letters)



>mm_chrX_83748632_83749320
          Length = 689

 Score =  524 bits (271), Expect = e-153
 Identities = 284/289 (98%), Gaps = 2/289 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagatgtataccaagctggccttgaactcacaggaatatacctgtctctacctccagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aagatgtataccaagctggccttgaactcacaggaatatacctgtctctacctccagagc 513

                                                                       
Query: 61  tctgggattaaatgactgagccaaggctccagttgactgtttttaatattgtttatccaa 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 512 tctgggattaaatgactgagccaaggctccagttgactatttttaatattgtttatccaa 453

                                                                       
Query: 121 gagtggaaattattatggctttgacaggaaccaattttcagcatggagtctggattcgaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 452 gagtggaaattattatggctttgacaggaaccaattttcagcatggagtctggattcgca 393

                                                                       
Query: 181 tctgatgtttcattcatgtactccctccctgtttgtattctgagacttttgtcttttcac 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 392 tctgatgtttcattcatgtactccctccctgtttgtagtctgagacttttgtcttttcac 333

                                                            
Query: 241 atgcacagtagggatcatagctacttctttttttt--ggggggggggtt 287
           |||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 332 atgcacagtagggatcatagctacttcttttttttttggggggggggtt 284


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 689
Length adjustment: 9
Effective length of query: 278
Effective length of database: 680
Effective search space:   189040
Effective search space used:   189040
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)