BAC Information

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BAC

Clone NameMSMg01-275C23
ChromosomeX (Build37)
Map Location 132,277,726 - 132,278,398
singlet/doubletsinglet
Overlap geneGprasp1
Upstream geneLOC100040520, Armcx6, Armcx3, Armcx2, LOC637800, LOC100040987, Nxf2, B930008K04Rik, EG621246, LOC100040635, Tceal6, EG621322, Pramel3, EG621352, EG331529, EG621380, EG666040, EG666045, AV320801, EG621467, Nxf7, 4930534P07Rik, 1700008I05Rik, 1700129I15Rik
Downstream geneGprasp2, Bhlhb9, LOC100041110, 2900062L11Rik, 6530401D17Rik, Bex2, Nxf3, Bex4, Tceal8, Tceal5, Bex1, LOC100040972, Wbp5, Ngfrap1, LOC666180, LOC237048, LOC666196, Kir3dl2, LOC100041079, Kir3dl1, Tceal3, Tceal1, Morf4l2, BC065397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275C23.T7 (MSMg01no275_c23.b1)MSMg01-275C23.TJ (MSMg01no275_c23.g1)
ACCAG413708AG413709
length748745
length of high quality
(start - end)
239 (126 - 364)675 (71 - 745)
definitionCHROMAT_FILE: MSMg01no275_c23.b1 PHD_FILE: MSMg01no275_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:52 2005CHROMAT_FILE: MSMg01no275_c23.g1 PHD_FILE: MSMg01no275_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATGTGGATTCCAATTGCAAGAACTAAAAATGGAGAGGCCATGTCACC
AAACTCTTAGAGCTGATCTTAACCCCCAAAGAACTCTTAGGCACGATTCC
AGATACACTTGCACAACCACATTCATCATTGCCCCATTCAAAATGGCCAA
GAAACTGAGCCAGCCTAGATGGTGATCAACAAAGGAATTGGTAAAAAAGG
GTGTAGCATATACACAGAATGGAAAATTTTCACACATAATGAGCAATAAA
ATCATGACATTGGCAGGAAAGTCAATGGAAATGATGTTATGTTAAACAAC
TTAGGTTCAGAAAGTCTAGCAGCACTATTTTCTTTCACCTATCTATCTGT
CTGTGTTTGTGTGTGTGTATCACATCTAGAACAGTTGTTTTCCCTCCTTT
TTCTCCTCCCAGTCACTCTCCCAACCTTCCCCCTACCCCCATCCACTCCT
CCTCTGTTTCCCTTCAGAAAAGGGCAGGCTTCTCAAGGATATCAGCCATG
CCATATCACGGTATAGTAAGACTAGGCACCTCCTCTCCTATTATACTGGG
ACCAGGGCAGCATGCAGGCAGACATACTGCTGGAGAAGTAGCCTAGAGTT
CTACATCCAGAACCACGGGCAGCAGGAATACAGAGACTGGACCTGGCTTG
GGTTCTTGAAACCTCAAAGCTTACCATCAGTGACACACTTCATCCAAG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGATTCCCTTTCTTTTTGTCATCCCCCC
ATGACACCCCCAAATCTCCACGTTCCTCTGCTATATTCTTAAAGCCTGAT
CATTTCCATGAAGGGACAACTAAATCATCTCTGCACAGTTGGTCGTACTG
GTAGCAGTAGGGATGAAACGCCTGACAATAACAGGAAGCTGGGGAAATAA
TGAAAAGTATCATTTTCAATTTTCTTACACATTCTTATGATTATCCCCCA
CCCACCCACACAAACCTATCACATTCTGCAACATAGTTGGGGTAACGCGG
AGGGCATTTCTGGAAGGCTGGAAAAGAGGAGATGTAGAAATTATTCTAGA
ACCCTACCTAGTCTTGCAGCTTTCTCCCACAGTACAGAAATCAGGTCAGT
TTTGTTTATCTTCTCCCCTCCCCTTTTGATCTGCCGCCCTGAAACGTGGA
GAAATGCAAACTTGGCACAAAATCTATCCACACAAATGAATGTGTGATAG
CCCCAAATCAAATGAAATCGCACTGAGTAAGATATGGTTAATTAATGGTC
AGATAAGAATGTGCAATCTTCGAATACACCCAACACAAGATTTAATGTTC
CCACATCTATAACCCCTTTGTGTATCTCCTTCCTGATTCTCAAGGCTCCT
CAGACAACTGCGTTCATCAGTGGTGGTAGTCCTTTCTCTGACAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_c23.g1 MSMg01no275_c23.g1 CHROMAT_FILE:
MSMg01no275_c23.g1 PHD_FILE: MSMg01no275_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:53 2005
         (675 letters)



>mm_chrX_132277526_132278600
          Length = 1075

 Score = 1301 bits (673), Expect = 0.0
 Identities = 673/673 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgattccctttctttttgtcatccccccatgacacccccaaatctccacgttcctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 tctgattccctttctttttgtcatccccccatgacacccccaaatctccacgttcctctg 814

                                                                       
Query: 61  ctatattcttaaagcctgatcatttccatgaagggacaactaaatcatctctgcacagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 ctatattcttaaagcctgatcatttccatgaagggacaactaaatcatctctgcacagtt 754

                                                                       
Query: 121 ggtcgtactggtagcagtagggatgaaacgcctgacaataacaggaagctggggaaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ggtcgtactggtagcagtagggatgaaacgcctgacaataacaggaagctggggaaataa 694

                                                                       
Query: 181 tgaaaagtatcattttcaattttcttacacattcttatgattatcccccacccacccaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tgaaaagtatcattttcaattttcttacacattcttatgattatcccccacccacccaca 634

                                                                       
Query: 241 caaacctatcacattctgcaacatagttggggtaacgcggagggcatttctggaaggctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 caaacctatcacattctgcaacatagttggggtaacgcggagggcatttctggaaggctg 574

                                                                       
Query: 301 gaaaagaggagatgtagaaattattctagaaccctacctagtcttgcagctttctcccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gaaaagaggagatgtagaaattattctagaaccctacctagtcttgcagctttctcccac 514

                                                                       
Query: 361 agtacagaaatcaggtcagttttgtttatcttctcccctccccttttgatctgccgccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 agtacagaaatcaggtcagttttgtttatcttctcccctccccttttgatctgccgccct 454

                                                                       
Query: 421 gaaacgtggagaaatgcaaacttggcacaaaatctatccacacaaatgaatgtgtgatag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gaaacgtggagaaatgcaaacttggcacaaaatctatccacacaaatgaatgtgtgatag 394

                                                                       
Query: 481 ccccaaatcaaatgaaatcgcactgagtaagatatggttaattaatggtcagataagaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ccccaaatcaaatgaaatcgcactgagtaagatatggttaattaatggtcagataagaat 334

                                                                       
Query: 541 gtgcaatcttcgaatacacccaacacaagatttaatgttcccacatctataacccctttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtgcaatcttcgaatacacccaacacaagatttaatgttcccacatctataacccctttg 274

                                                                       
Query: 601 tgtatctccttcctgattctcaaggctcctcagacaactgcgttcatcagtggtggtagt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tgtatctccttcctgattctcaaggctcctcagacaactgcgttcatcagtggtggtagt 214

                        
Query: 661 cctttctctgaca 673
           |||||||||||||
Sbjct: 213 cctttctctgaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)