BAC Information

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BAC

Clone NameMSMg01-276K05
ChromosomeX (Build37)
Map Location 16,981,799 - 16,981,996
singlet/doubletsinglet
Overlap genenone
Upstream geneCypt6, LOC100038939, LOC668993, Maoa, Maob, Ndph, LOC100043063, Efhc2
Downstream geneFundc1, EG278181, EG668994, EG436196, EG331391, Dusp21, LOC100043951, Utx, LOC100043952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276K05.T7 (MSMg01no276_k05.b1)MSMg01-276K05.TJ (MSMg01no276_k05.g1)
ACCAG414768AG414769
length739803
length of high quality
(start - end)
317 (46 - 362)210 (77 - 286)
definitionCHROMAT_FILE: MSMg01no276_k05.b1 PHD_FILE: MSMg01no276_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:37 2005CHROMAT_FILE: MSMg01no276_k05.g1 PHD_FILE: MSMg01no276_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATATTGTAATCCGGGAGCTATTCAAATACGGTGTTGAGTGGAGAG
AATTTCCTTTAAGAGTCCAAATATCACAAATGAAAACAAGAGTTGGAAAT
GGTGATATACTGCAATAATTCCAGCATACAGAAAGCTGATGCAGGAGGAT
CAGAGTGGCTAGAGGCTATAATGGGTATGTAGTAAGCTCCTGTCTCACAC
AACAAAGGCTGAGTGTGATGGTGTTCACCTTTAATCCCAAGCACCTGGGA
GGCAGAGGCAGGCAGGCCTCTGAATTCTCAGCCAACTTGGTCTACATATT
GAATTCTGGGCTAGTTTTTTATACCCCCCCCCCCCTATCTCTAAAACCCA
AACCTAACAAAACAACAGCAGCAAAAAACAGGTAACAAAAGATAACACTT
TTATTGTACACTTCTAAGTCTCTTGAAATTTTGAAATGTTTTGTATGTAA
ATGTAAGTTGTTTCCAGTACTCTGTCATACCTTCCCCTCTCTCAGTCTTC
TTGTTTCCCCTCCTGGCTATGTTGTTTCTTCCTCTAGGTTGAGCATTACC
TGAAACGATGTGTTACTCAATCTCTTAACTTGTATGACATACGCACTGAC
TAAATGTCCCTTATCTGAACTCTTGGCGTCAGACGTATTTTTTTATTTCA
TGTTCTGGAATATTTCCTGCTGTAGTTTTTTTCCCTTCN
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTCCTTCCTTCCTCCAACTTC
TTTGAGTTATTTTTGTGTCTCTTGACTAATTTTAATAGAAAGCAAATGTT
CTATTGTTAAATGTTTAATGGGCAGTAACATCACTAAAAGAAAAAACAGA
CTTTTCAGGCTTGAGATCAACACAATTTCCACCTTCCGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTCTTTTTTTTTNNNTT
NTAAATTTTTNNNNNNNNNTTTTTTTTTTTNNNNNNNNNNNANNNNNNNT
NNNNNNNANNTTTANNTTTTACCCAAAAAACANAAACCCAAATAATATTA
AAAAAATTTTNNGGNNNNNNNNNAAAAAAAAAAAAAAAAAAAATTTTGGG
GGGGGGGGAGGGTTTTATTTTTTTTTATTTTTGTTTTTTATAGTTTATTT
AAAAATAATATTTTTAATGTTATTATATTATTTTAAAATATTGTTGAAAA
ATAAATATATTATATGTTTGTTTTTATTTTTTAATATATTTATATTAAAA
AATATTGTGTGTTTTTATTAAATGATATATATATTTTATTTTATTTATTT
TTATTATTTTATTTATTTATTTAAAAAATTTATTTTAATTTTATTGTATA
ATATTTTTATTAGATTTAAGTATTTGTATGAAAATCTATGACCAGTTATT
GTTGTTTATGGTTATTAGTAGAGGTTTATAAAGATTTTTTAAGTGGGGTA
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_k05.g1 MSMg01no276_k05.g1 CHROMAT_FILE:
MSMg01no276_k05.g1 PHD_FILE: MSMg01no276_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:37 2005
         (210 letters)



>mm_chrX_16981599_16982209
          Length = 611

 Score =  375 bits (194), Expect = e-109
 Identities = 197/198 (99%), Gaps = 1/198 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtccttccttcctccaacttctttgagttatttttgtgtctcttgactaattttaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggtccttccttcctccaacttctttgagttatttttgtgtctcttgactaattttaat 260

                                                                       
Query: 61  agaaagcaaatgttctattgttaaatgtttaatgggcagtaacatcactaaaagaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaagcaaatgttctattgttaaatgtttaatgggcagtaacatcactaaaagaaaaaa 320

                                                                       
Query: 121 -cagacttttcaggcttgagatcaacacaatttccaccttccgtgtgtgtgtgtgtgtgt 179
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagacttttcaggcttgagatcaacacaatttccaccttccgtgtgtgtgtgtgtgtgt 380

                             
Query: 180 gtgtgtgtgtgtgtgtgt 197
           ||||||||||||||||||
Sbjct: 381 gtgtgtgtgtgtgtgtgt 398


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 611
Length adjustment: 9
Effective length of query: 201
Effective length of database: 602
Effective search space:   121002
Effective search space used:   121002
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)