BAC Information

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BAC

Clone NameMSMg01-277O23
ChromosomeX (Build37)
Map Location 13,580,047 - 13,580,336
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9x, LOC100043000, LOC100043002, LOC675380, Ddx3x, LOC385326, LOC634019, LOC668990, LOC100043947, LOC100043948, Nyx, LOC675416, Cask, Gpr34, Gpr82, LOC385327
Downstream geneEG385328, LOC668991
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277O23.T7 (MSMg01no277_o23.b1)MSMg01-277O23.TJ (MSMg01no277_o23.g1)
ACCAG415698AG415699
length758751
length of high quality
(start - end)
370 (389 - 758)287 (440 - 726)
definitionCHROMAT_FILE: MSMg01no277_o23.b1 PHD_FILE: MSMg01no277_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:09 2005CHROMAT_FILE: MSMg01no277_o23.g1 PHD_FILE: MSMg01no277_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGCCCACACCTAAACATGATAAAAGCAATCTACAGCAAACCAGT
AGCCAACATCAAAGTAAATGTTGACCCGCTGGAAGCAATCCCACTAAAAT
CAGGGAATAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTA
CTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGAT
ACAAATTGGAAAGGAGGAAGTCAAAATATCATTTTTTGCAGATGATATGA
TAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTG
ATAAACAGCTTCGGTGAAGTAGCTGCATATCAAATCACCTCAAACAAGTC
AATGGCCTTTCTCTACACNAAGAATAAAAAAAAAGAAAAAGAAATTAGGG
AAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTG
ACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCT
GAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCT
CATGGATTGGCAGGATCAATATTGTAAAAATGGCTATCTTGCCAAAAGCA
ATCTACAGATTCAATGCAATCCCCATCAAAATTCCAATTCAATTCTTCAA
CGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTA
GGATAGCA
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTCAGTTTCCTACTGAGTGTGGTT
TTGGCACCCTTGTCACAAAGTCATTGCATATATATATATATATATATATA
TATATATATATATATATATATATATATATATGAAAGTAGTTCTGAGCTCT
TGACTATTCAATTTGTTTATACATCTACTACTATGTCAGGCTCACACCCT
TTTGATTATTGTAACTTTGTAGTAAGTCCTTCAACTTTAATTGTTTGGGC
TTCTGAGTCTCTTCAAATTCTATGTTCTAGTTTTGTGAAAATCTTTAGGA
TGACTTTCATAGTTAACATANCTCTCAAACTTNTACCACAAAAAGATGGC
TTTAGTTACATACTATACATTTTAGAAAAAAAAAAATAAATATCAGTTAG
CATAAAATATCTTTACATTTCTCTCTGGATTTATCCTTCAATTTGACCAT
TTGAGTACATTGCTTATTATAATTTCCATGTTTTGTGAATTTTCACAATT
TATTTTTAACTCTAAATTTATGTTTTGTGTGTGGTCTTGGTGCTCTGTAT
GAATATTATATACAATTATATTCCTGTAATTGTTAACTTTTGTTACTAGC
TTTGCTTAGAAAAACAACACTGAAGAACTAAGATTTAAGTTTTTATCAAA
CTAAGTGTAGTTATTACTTTTCTTGACCTCTCCCTAAATCTTGAGTCTAA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_o23.g1 MSMg01no277_o23.g1 CHROMAT_FILE:
MSMg01no277_o23.g1 PHD_FILE: MSMg01no277_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:09 2005
         (287 letters)



>mm_chrX_13579846_13580536
          Length = 691

 Score =  518 bits (268), Expect = e-151
 Identities = 283/290 (97%), Gaps = 4/290 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   tatcagttagcataaaatatctttacatttctctctggatttatccttcaatttgaccat 61
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tatcagttaacataaaatatctttacatttctctctggatttatccttcaatttgaccat 261

                                                                       
Query: 62  ttgagtacattgcttattataatttccatgttttgtgaattttcacaatttatttttaac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttgagtacattgcttattataatttccatgttttgtgaattttcacaatttatttttaac 321

                                                                       
Query: 122 tcta----aatttatgttttgtgtgtggtcttggtgctctgtatgaatattatatacaat 177
           ||||    ||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 322 tctatttaaatttatgttttgtgtgtggtcttggtgctctgtatgcacattatatacaat 381

                                                                       
Query: 178 tatattcctgtaattgttaacttttgttactagctttgcttagaaaaacaacactgaaga 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tatattcctgtaattgttaacttttgttactagctttgcttagaaaaacaacactgaaga 441

                                                             
Query: 238 actaagatttaagtttttatcaaactaagtgtagttattacttttcttga 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 actaagatttaagtttttatcaaactaagtgtagttattacttttcttga 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 691
Length adjustment: 9
Effective length of query: 278
Effective length of database: 682
Effective search space:   189596
Effective search space used:   189596
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)