BAC Information

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BAC

Clone NameMSMg01-278D01
ChromosomeX (Build37)
Map Location 116,566,411 - 116,566,701
singlet/doubletsinglet
Overlap genenone
Upstream geneTgifx1, LOC665087, LOC385417
Downstream genePabpc5, LOC236983, LOC674318, EG545741, LOC100039461, Pcdh11x, H2afb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278D01.T7 (MSMg01no278_d01.b1)MSMg01-278D01.TJ (MSMg01no278_d01.g1)
ACCAG415882AG415883
length715719
length of high quality
(start - end)
583 (66 - 648)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no278_d01.b1 PHD_FILE: MSMg01no278_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:27 2005CHROMAT_FILE: MSMg01no278_d01.g1 PHD_FILE: MSMg01no278_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGATCGCGGGCCCACTGTCGTACTTCTCTGGCTGTGAAATGAGT
TCCTTGGTCAGAAGCAATACTGTGTGGAATACCATGACGATAGATAAGGC
ATTCTGTCAATCCGTGAATGGTGGTTTTAGCAGAGGCATTACGTGCAGGA
AAGGCAAATCCATAACCAGAATAAGTATCTATTCCAGTAAGAACAAAACG
CTGTCCTTTCCATGAAGGAAGTGGTCCAATGTAGTCAACCTGCCACCAGG
TTGCTGGCTGGTCACCTCGAGGAATGGTGCCATATCTGGGGCTCAGTGTT
GGTTTCTGCTGTTGGCAGATCTGGCAATCAGCAGCAGCTGTAGCCAGGTC
AGCTTTGGTGAGTGGAAGCCCGTGTTGCTGAGCCCAAGCATAACCTCCAT
CTCGACCACCATGGCCACTTTGTTCATGTGCCCATTGAGCAATGACAGGG
ATGGCTGGGGAGAGAGGCTGACTGTCCACAGAACGGGTCATCTTATCCAC
TTGATTATTGAACTCATCCTCGGCTGAAGTCACCTTTTGGTGAGCATTTA
CATGGGACACAAATATCTTCACATCCTTTGCCCATTTGGAGATATCTATC
CCCCTACTTCTTCCCCATATGTCTTTCTCACCAATTTTCCCCCTGTGATC
TTTTCAAGCCCCTGG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTCATGCATTTGGCGGATAATA
GTAATGTTAGAAAAAGGCTCACCCATATGAATAAATAATTTACCATAAAA
AAAATTACAATTGAGAACATTCTGAATGTATCTTCTTCCAACATTATTCA
TAATTTACTTTTACCTTCAAATTCTTAGAATAAACAGTTACTAAAATTTT
TATATTTTAATACACAGACCTTGTTTAATCATAAAGATAAGATGTATATT
ATTGTTTAGTATATTTTAAAATTTTTATTTCCAATCAATAAAACCACAAT
AAAAATAAATTTTATGTAGTTTATTTACCAAATACCAGGTAATTACATTA
AATAATTAAGTAATTGAGCATGTACTGAGAAAATAATTTTATACCTTTTC
GAATATATTTCATAAATTTTATTAACTATATATATTATTTATTAATTTAA
GACTGTTTAGTATATCTCATATGCAACTGAAAAAATACATAATTATATGA
TGCAAAACACATATCTTCTTTCACTCATTGTTTCATCTTCTTTCCTAACA
ACAAATATATTCCCATTTATGTAATACGTTGAAGAAAATATTTTATTATT
ACATATCTGTATAAGCACATATTTTGAGTATCCCACTTTGGAAGTTGTTG
TGCACACATGGGCTCATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_d01.g1 MSMg01no278_d01.g1 CHROMAT_FILE:
MSMg01no278_d01.g1 PHD_FILE: MSMg01no278_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:27 2005
         (292 letters)



>mm_chrX_116566338_116567028
          Length = 691

 Score =  526 bits (272), Expect = e-154
 Identities = 287/292 (98%), Gaps = 1/292 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttcatgcatttggcggataatagtaatgttagaaaaaggctcacccatatgaataaat 60
           |||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||
Sbjct: 364 atttcatgcatttggcggataataataatgttagaaaaaggctcattcatatgaataaat 305

                                                                       
Query: 61  aatttaccataaaaaaaattacaattgagaacattctgaatgtatcttcttccaacatta 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aatttaccat-aaaaaaattacaattgagaacattctgaatgtatcttcttccaacatta 246

                                                                       
Query: 121 ttcataatttacttttaccttcaaattcttagaataaacagttactaaaatttttatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttcataatttacttttaccttcaaattcttagaataaacagttactaaaatttttatatt 186

                                                                       
Query: 181 ttaatacacagaccttgtttaatcataaagataagatgtatattattgtttagtatattt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 185 ttaatacacagaccttgtttaatcataaagataagatgtatattattgtttaatatattt 126

                                                               
Query: 241 taaaatttttatttccaatcaataaaaccacaataaaaataaattttatgta 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 taaaatttttatttccaatcaataaaaccacaataaaaataaattttatgta 74


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 691
Length adjustment: 9
Effective length of query: 283
Effective length of database: 682
Effective search space:   193006
Effective search space used:   193006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)