Query= MSMg01no279_e03.b1 MSMg01no279_e03.b1 CHROMAT_FILE:
MSMg01no279_e03.b1 PHD_FILE: MSMg01no279_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:48 2005
(690 letters)
>mm_chrX_159369121_159370210
Length = 1090
Score = 1143 bits (591), Expect = 0.0
Identities = 633/663 (95%), Gaps = 26/663 (3%)
Strand = Plus / Minus
Query: 5 gaattcacatgtatccacccacacagagacacatacacagaa------------------ 46
|||||||||||||| |||||||||||||||||||||||||||
Sbjct: 660 gaattcacatgtatacacccacacagagacacatacacagaactaaaaacaaattaatga 601
Query: 47 -----ctggaagagcaggctgggactcaccatcaggttcaacttgtggttgatggccaag 101
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gagagctggaagagcaggctgggactcaccatcaggttcaacttgtggttgatggccaag 541
Query: 102 gctgagtgctccagtgctttgaacacagaggcatagcagtccctgagtttggtgtattta 161
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 540 gctgagtgttccagtgctttgaacacagaggcgtagcagtccctgagtttggtgtattta 481
Query: 162 ccaaccagggctatggaacatattttctgcaatctctcatacctgagagggaaaacaaat 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ccaaccagggctatggaacatattttctgcaatctctcatacctgagagggaaaacaaat 421
Query: 222 tcaaagtccatatgtacactatgacacatcacaagcaacaacgtggccactgctcttatt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tcaaagtccatatgtacactatgacacatcacaagcaacaacgtggccactgctcttatt 361
Query: 282 ccaaggtacttttcagaaccttaggcagagacaagacactcagtgtacttgactcaaatc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ccaaggtacttttcagaaccttaggcagagacaagacactcagtgtacttgactcaaatc 301
Query: 342 tctcctccaccatgccaatgtctgggcatcacacagacttcaaaggcacaagaagagctg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tctcctccaccatgccaatgtctgggcatcacacagacttcaaaggcacaagaagagctg 241
Query: 402 gggagatggctcagtttgggaagcacttgacacataaggatgaggacctgagctcttagc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gggagatggctcagtttgggaagcacttgacacataaggatgaggacctgagctcttagc 181
Query: 462 tccagaaaccataaaaaaaaaaaatccaggcacagtaacacacatctgtaaccccagcat 521
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tccagaaaccat---aaaaaaaaatccaggcacagtaacacacatctgtaaccccagcat 124
Query: 522 tcctatgaggagataggaggtggagcaagagactcccagcaactgtcctctgtctccata 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tcctatgaggagataggaggtggagcaagagactcccagcaactgtcctctgtctccata 64
Query: 582 tgtaactggtggcaacaaatgtgtgcacacgaccgcatactaattaagaaacaaaattta 641
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 63 tgtaactggtggcaacaaatgtgtgcacacgaccgcatacaaattaagaaacaaaattta 4
Query: 642 tca 644
|||
Sbjct: 3 tca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no279_e03.g1 MSMg01no279_e03.g1 CHROMAT_FILE:
MSMg01no279_e03.g1 PHD_FILE: MSMg01no279_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:48 2005
(634 letters)
>mm_chrX_159179275_159180308
Length = 1034
Score = 1172 bits (606), Expect = 0.0
Identities = 627/634 (98%)
Strand = Plus / Plus
Query: 1 tctctcagccattacctttccccaagtccaaccggatgactcataaaccgcctgtaggta 60
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 201 tctctcagccattacctttccccaagtccaaccagatgactcataaagcgcctgtaggta 260
Query: 61 gaaggaaattacagctcttcgtatttgaggacagaggttgacaaagtctgtaaaagacca 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaggaaattaaagctcttcgtatttgaggacagaggttgacaaagtctgtaaaagacca 320
Query: 121 gagcagcacatgctcttaattctgaaacagctctccagcctcttgctttgtctgtttttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcagcacatgctcttaattctgaaacagctctccagcctcttgctttgtctgtttttg 380
Query: 181 aggtagctcaggttagcgtaggacttgtaatcctcctgcctcagcttcatgagctttgtc 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtagctcaggttagtgtaggacttgtaatcctcctgcctcagcttcatgagctttgtc 440
Query: 241 accacatctggttattaatatcattttacaggtggctttttttcagttaatcatattgta 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 accacatctggttattaatatcattttacaggtggctttttttcagttaaacatattgta 500
Query: 301 aacaagtttctatttcagtagccacaaaatccaccatttctcttctgtaaaataattcaa 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacaagtttctatttcaatagccacaaaatccaccatttctcttctgtaaaataattcaa 560
Query: 361 caattgcaggacaaaagatactctggttgcttagataccaagatgaatcctgtatgtatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caattgcaggacaaaagatactctggttgcttagataccaagatgaatcctgtatgtatc 620
Query: 421 tcagctataataaagagctttcagttgggtgtagtgttccacatttttaataccagggct 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 tcagctataataaagagctttcagttgggtgtagtgttccacatttgtaataccagggct 680
Query: 481 tcggtggttgaaccagaaggagcaataagtcaagggcagcctgggctacataatgaaacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcggtggttgaaccagaaggagcaataagtcaagggcagcctgggctacataatgaaacc 740
Query: 541 cagtctcaaacaaacaagggctagggatattgcttattaaatgaacatttgccttttacc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagtctcaaacaaacaagggctagggatattgcttattaaatgaacatttgccttttacc 800
Query: 601 tacaaggctttgggttggattcctagtactacca 634
||||||||||||||||||||||||||||||||||
Sbjct: 801 tacaaggctttgggttggattcctagtactacca 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
