BAC Information

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BAC

Clone NameMSMg01-280J24
ChromosomeX (Build37)
Map Location 69,978,535 - 69,978,826
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC654357, 2610030H06Rik, Gm1141, Prrg3, Fate1, Cnga2, Magea4, Gabre, Magea10, Gabra3
Downstream geneGabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280J24.T7 (MSMg01no280_j24.b1)MSMg01-280J24.TJ (MSMg01no280_j24.g1)
ACCAG417670AG417671
length747745
length of high quality
(start - end)
292 (456 - 747)270 (451 - 720)
definitionCHROMAT_FILE: MSMg01no280_j24.b1 PHD_FILE: MSMg01no280_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:31 2005CHROMAT_FILE: MSMg01no280_j24.g1 PHD_FILE: MSMg01no280_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTAGCTTTTTCCAGACATTAGTAAAGGTTATTTTTACAATATTG
TGTTAAAATATTCCACCTAATATTACAAAATATTATAAATACCTAGGAAG
AAATCTACTGGCTGTAATGAAGACACACGTGTGAGTGTGTGTGAGTGTCT
CTCTGTATGTGTAGGCCAAAGTTGACTTCCTGCGGTGGAGGGCCTTCATC
AATAGCATTTTTACATGATTTGTTTTTTGTTGTTGTGTTTTTGTTTTTGT
TTTTTGAGAAAAGATCTCTTGGAGTTGTTTGATTTAGCGAGGCTGACTAA
CTGTCAGCAAGTTCCCATGNCCCTTNTGCCTNNTACCTGTAGGTACATAG
CACCATGGTGATATTTATACTGGGGATAAGNAATNAAATCTTATGCTTTT
GCAGTAGAACTTTATGCACTGAGCTGTCCTGCCAACCCCAATCATGTTAT
ACTTTACTAATGGAAAGAAAGGCATGAGTAAGTGAAGAAACATACTTGAA
ATTTGAATGGGACATGGTAAAAAAATTCTGAAGCTCACTATACTTGAAGC
ACTGTCTCTGTCACTTCCCATCAGTATAAACTTGGTATCTTCTTTGCGTT
TACTGTTTCCTTCATTTGTAAAGTGACAATTATACATCAGTCTCTCCTTT
ATGAGCTTAACTGAGGAACTCTATCTACCATGTCTAATCTGTATTGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCGAAATTCTTTGTTTAGCTCTGTATCCCATTTGTAA
TGGAGTTATTTGATTTTTTGGACCACAAATTCTTGAAAATATATATATAT
ATATATATTGGAAATTAGTCCCCTATCAGATTTAGGATTGGTAGAGATCC
TTTCTGAAACTGTTGGTGGCATTTTTGTCTTACTGACAGTGTCTTTTGTC
TTTCAGAAGCTTTGCAATTTTATGAGGCCCCATTTGTTGATTCTCGATCT
TACAGCACAAGTCATTGGTGTTCTGTTTGGGAATTTTTCCCCATTGCCAG
TATCTTCGAATTTTTTGCCTTCCCCCCCCCCCCCCAATTTCAGTGTCTCC
GGTTTTATGAGGAGTTCTTTGATTTGAGAAAAAAGAAAGANGATGGGAAT
GGATCAATTCGCATTCTTATACACATAACAACCAGTTGTGCCAGCACCAA
TTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTATCTCCCTTGTC
AAAGATCAAGTGACCATTCGTGGGTGGGTTCATTTCTGGGTCTTCAATTC
TATTCCATTGATCTACCTGTCTGTCACTATATCAGTACCATGCAGTTTTT
AATCACAATTGCTCTGTAGTACAGCTTGAGGTCAGGCATGGTGATTCCAC
CAGAGGTTCTTTTATTGCTGAGAAGAGTTTTTGCCATACTAGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_j24.b1 MSMg01no280_j24.b1 CHROMAT_FILE:
MSMg01no280_j24.b1 PHD_FILE: MSMg01no280_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:31 2005
         (292 letters)



>mm_chrX_69978335_69979026
          Length = 692

 Score =  557 bits (288), Expect = e-163
 Identities = 291/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaactttatgcactgagctgtcctgccaaccccaatcatgttatactttactaatggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 agaactttatgcactgagctgtcctgccaaccccaatcatgttatactttactaatggaa 433

                                                                       
Query: 61  agaaaggcatgagtaagtgaagaaacatacttgaaatttgaatgggacatggtaaaaaaa 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agaaaggcatgagtaagtgaggaaacatacttgaaatttgaatgggacatggtaaaaaaa 373

                                                                       
Query: 121 ttctgaagctcactatacttgaagcactgtctctgtcacttcccatcagtataaacttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttctgaagctcactatacttgaagcactgtctctgtcacttcccatcagtataaacttgg 313

                                                                       
Query: 181 tatcttctttgcgtttactgtttccttcatttgtaaagtgacaattatacatcagtctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tatcttctttgcgtttactgtttccttcatttgtaaagtgacaattatacatcagtctct 253

                                                               
Query: 241 cctttatgagcttaactgaggaactctatctaccatgtctaatctgtattga 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cctttatgagcttaactgaggaactctatctaccatgtctaatctgtattga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)