BAC Information

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BAC

Clone NameMSMg01-289N22
ChromosomeX (Build37)
Map Location 55,165,612 - 55,370,731
singlet/doubletdoublet
Overlap geneZic3
Upstream geneGpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6, Rbmx, Snord61, Gm364, Gpr101, Aldoa-ps, EG666441, LOC666447
Downstream geneLOC631581, LOC631621, 4930550L24Rik, Fgf13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289N22.T7 (MSMg01no289_n22.b1)MSMg01-289N22.TJ (MSMg01no289_n22.g1)
ACCAG419303AG419304
length729735
length of high quality
(start - end)
239 (128 - 366)293 (74 - 366)
definitionCHROMAT_FILE: MSMg01no289_n22.b1 PHD_FILE: MSMg01no289_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:16 2005CHROMAT_FILE: MSMg01no289_n22.g1 PHD_FILE: MSMg01no289_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,165,612 - 55,165,850)(55,370,440 - 55,370,731)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGGAGACGGGGGAAATAGTGTTTGCATTTCTCTTGGAAAAGGAGC
AAAGACTCAGTGTTCATCATTCTTCCTAGAGGTCAGGAAGGCAAGATGGC
TTCTACCATCTACATGGGTAAAGAACAGGAAAGAGCTTACCTTTCTGCCT
TCTACCTGTCAGTCATCACTGATCTGCTATGTTTCTTTTCTCAGATGTAC
TTCCTCATCTGTTTTCCCATGAGGTTGGATCAACTCTGTTTTCGGAGTAC
TTGTCAATTCCCTCTACTTCAGTCCATTGTCATTGTCCTGGTCAGGCTCC
TCTTTATCTCCCATCTATTATATAGCCCACCCCCCAATGGGCTCACTTAC
TTCACTCTTGGCCCCTACACCCCGTTTTCAAGAAGAAAACGGAGTGATTT
TGTGAAAATATATACTGGATCATCTCGCCTGGTGGCTCAAAATATTTCAG
GGCCTCCCCTTTCTCAACTGACAAAGGCAATTTCCTTTCAAAGACCTATG
ANAGTCTCCCATGGTTGGGTAAGTGGCTGTGACTCCCCAGTGTTCCTGCA
AAGCATACTTCTCCTGACCTCCACCATGTCACGAGCAATACACTGTANCT
GTTGCTATCTACTGAATTCGGTAATCAAACTACTTGGTCTTGACCATATA
AGTACTTGGTAACTGAGACAACTGACTTA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAATGACAGGGCTAAAAGAGTTCATA
GGCATGAAACATGGCTGAAAAAAAGCCCATAGTGGCGAATTAAAAGGAAG
CTAATTTGGGGCCAGCAACCTGCAGCCATGTCTGTTTTTAAATAGGAAAG
AGGGACAAGAGAGGAACGGTTTTCTGTGTTTTGTTTTGGAGAGAAGAATT
TCAAAATAACAAAACAAAACAATCTTGATCCATAGAAATGTCTATCTTAA
TGCTGTTTGCTTCAAGGTCTAGTAGTTGGCCTTGGGAATCTTGACATTAA
GGTCACTTGTGGTTGNGTTGNNACACCCCCCCCCCCCCCAACACTAAGAA
AACTGAAGCATAAGGTTTATGACCCCGAGGACAAAATAAAGAGTGTATGT
GTGTGTTCATGTATATGTATATTACAAGAAAATTCCAGGACAGTTTCAGA
ATCATAGTAAAGTCTTGTCTCGGAAAACAAATATACAAAACAATTATAGT
TGACAGGGCCTTCCTATTGCCCTGTGATGAAGATAGTGGATCTATTTTAG
CATGGATTGAAAGAATCCAGAAAGGTGTTTTGTAAGAGTAGTGCAGGTGG
TCAGAAAGACTTCCTAACGTTCTTTTCAGAGAGGTGACAACACATAATTT
CATTTAGAGACATATACCCTGAACCCTGGCTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_n22.b1 MSMg01no289_n22.b1 CHROMAT_FILE:
MSMg01no289_n22.b1 PHD_FILE: MSMg01no289_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:16 2005
         (239 letters)



>mm_chrX_55165412_55166050
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggtcaggaaggcaagatggcttctaccatctacatgggtaaagaacaggaaagagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaggtcaggaaggcaagatggcttctaccatctacatgggtaaagaacaggaaagagct 260

                                                                       
Query: 61  tacctttctgccttctacctgtcagtcatcactgatctgctatgtttcttttctcagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacctttctgccttctacctgtcagtcatcactgatctgctatgtttcttttctcagatg 320

                                                                       
Query: 121 tacttcctcatctgttttcccatgaggttggatcaactctgttttcggagtacttgtcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 tacttcctcatctgttttcccatgaggttggatcaactctgttttcggagtacttgttaa 380

                                                                      
Query: 181 ttccctctacttcagtccattgtcattgtcctggtcaggctcctctttatctcccatct 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccctctacttcagtccattgtcattgtcctggtcaggctcctctttatctcccatct 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no289_n22.g1 MSMg01no289_n22.g1 CHROMAT_FILE:
MSMg01no289_n22.g1 PHD_FILE: MSMg01no289_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:16 2005
         (293 letters)



>mm_chrX_55370333_55371025
          Length = 693

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatgacagggctaaaagagttcataggcatgaaacatggctgaaaaaaagcccatagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 caaatgacagggctaaaagagttcataggcatgaaacatggctgaaaaaaagcccatagt 340

                                                                       
Query: 61  ggcgaattaaaaggaagctaatttggggccagcaacctgcagccatgtctgtttttaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ggcgaattaaaaggaagctaatttggggccagcaacctgcagccatgtctgtttttaaat 280

                                                                       
Query: 121 aggaaagagggacaagagaggaacggttttctgtgttttgttttggagagaagaatttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aggaaagagggacaagagaggaacggttttctgtgttttgttttggagagaagaatttca 220

                                                                       
Query: 181 aaataacaaaacaaaacaatcttgatccatagaaatgtctatcttaatgctgtttgcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 aaataacaaaacaaaacaatcttgatccatagaaatgtctatcttaatgctgtttgcttc 160

                                                               
Query: 241 aaggtctagtagttggccttgggaatcttgacattaaggtcacttgtggttg 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 aaggtctagtagttggccttgggaatcttgacattaaggtcacttgtggttg 108


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)