BAC Information

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BAC

Clone NameMSMg01-290B24
ChromosomeX (Build37)
Map Location 108,565,533 - 108,740,490
singlet/doubletdoublet
Overlap geneRps6ka6, EG664791, D030011N01Rik
Upstream geneEG634340, LOC668530, LOC100043316, Pou3f4, Cylc1, LOC100042872
Downstream geneLOC100038989, Tex16, LOC622570, 4933403O08Rik, EG385407, Apool, Satl1, EG623341, 2010106E10Rik, Zfp711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290B24.T7 (MSMg01no290_b24.b1)MSMg01-290B24.TJ (MSMg01no290_b24.g1)
ACCAG419491AG419492
length738734
length of high quality
(start - end)		671 (48 - 718)294 (78 - 371)
definitionCHROMAT_FILE: MSMg01no290_b24.b1 PHD_FILE: MSMg01no290_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:35 2005CHROMAT_FILE: MSMg01no290_b24.g1 PHD_FILE: MSMg01no290_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,565,533 - 108,566,199)(108,740,197 - 108,740,490)
sequence
TCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTCATTTGTCCAGGTTTTAAAGAGCTGATCCTACACACATAA
AAAGAAATAGTGGCAATTACCAGAGGCCAGGATTCTAGTAGATAGTTTAT
TACTGATAGTTACAATCACTTCTTCAGTCGATATTTATCTTTTTGTAAGT
TTTTATTAACATTGGGTTAGCAAGGTAACAGCTAACATGAGGAAGTCTGC
AGGAGAGTCTCTCCTTCTACTACATGGGTCTCAGAGTTCAAACTCAGGTC
ATTGGGCCTAGAGGCAAGCATTTTTATGCACTGCACCATATTGCTAGCCC
ACATTTATATTTTTAATCTTTTAAACTGAATTCCATAATCAAGACTATAA
GAAGAAGCTAGATACTCACTTAAATAACTGGTCCATATTCTTTCCAGCTT
TTTAATTAAAGACTATATTCCTATATAGTTCCTAGTCCAAATTCGTAGTC
CTTTGAAACATATAGCCCATCAAGCATGGGCCATTGCTATGGGGAGAGTT
TTAAAAGGGGCTATTTTGTTTCAAATTAATATGAAAAAGTTGTCTGAAAA
AAAATCTAAGGACAAAACATGAATATATACCACCTCTAAGCTATCTCCTT
AGTCAGATATCTAGAAGCAATCATGAGCCTTTGCTGTNAAATGAATTCCC
TGAAGGCACAAAAACAAAATTAAAGATATAGATGGCCN

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACCTTATCCTGTAAATGTCCACT
CACTCTGTTCCCTCTCTAAATGGGTCTTCGCAATTTTAATGCTAATTGAT
TTTTATTACCTTATTTATTTTCTTAGTTAAAATATGCTCTTAGGAGTTTT
AAAAAGAACTGTGCTTCTTTCAGAAGCTTCTACTTAATAGGCATTGTCAT
AATAGGTCGCCTTTAGCATTGCTAATGCTTAGACCCCAGCACATTTCTAG
CAAATAAAATCAGGTTTTATTTAGTTCAATTTAAAGAATGAATCAGCTTT
GGATGTCCTCTAAATGAATTACTAATTAACTGGCTGAGCGTGTTCAGTGT
TCTGTTCATTACTTCTTCCATTCTGACAGTAATGTAGGTTAACTCGCACT
AGAGAATTTGGTGCAATGGAAATTCATGGGAATATTCATGACAGCAGTTG
CAGTGAATTATTTGAACCTTCCTAGAATCTTCCACAATTGATTTTATCCT
GGGTTTTGAGAATTTTAATTCCACAACTGTTGTGCAATCAATGTAGAACA
AATAANAGATGTGATTTTTTTTATGTTGCAAATAACATTAGACCCCTTTG
ATGAGGAAAAAAAACTTTAAATGGCATGTTTAGATTCATTCAATGAAAAC
ATATGATTTAATAATAGTACTTACAATAAATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_b24.b1 MSMg01no290_b24.b1 CHROMAT_FILE:
MSMg01no290_b24.b1 PHD_FILE: MSMg01no290_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:35 2005
         (671 letters)



>mm_chrX_108565329_108566399
          Length = 1071

 Score = 1261 bits (652), Expect = 0.0
 Identities = 663/667 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtcatttgtccaggttttaaagagctgatcctacacacataaaaagaaatagt 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtcatttgtagaggttttaaagagctgatcctacacacataaaaagaaatagt 264

                                                                       
Query: 65  ggcaattaccagaggccaggattctagtagatagtttattactgatagttacaatcactt 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcaattaccagaggctaggattctagtagatagtttattactgatagttacaatcactt 324

                                                                       
Query: 125 cttcagtcgatatttatctttttgtaagtttttattaacattgggttagcaaggtaacag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttcagtcgatatttatctttttgtaagtttttattaacattgggttagcaaggtaacag 384

                                                                       
Query: 185 ctaacatgaggaagtctgcaggagagtctctccttctactacatgggtctcagagttcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctaacatgaggaagtctgcaggagagtctctccttctactacatgggtctcagagttcaa 444

                                                                       
Query: 245 actcaggtcattgggcctagaggcaagcatttttatgcactgcaccatattgctagccca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actcaggtcattgggcctagaggcaagcatttttatgcactgcaccatattgctagccca 504

                                                                       
Query: 305 catttatatttttaatcttttaaactgaattccataatcaagactataagaagaagctag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catttatatttttaatcttttaaactgaattccataatcaagactataagaagaagctag 564

                                                                       
Query: 365 atactcacttaaataactggtccatattctttccagctttttaattaaagactatattcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atactcacttaaataactggtccatattctttccagctttttaattaaagactatattcc 624

                                                                       
Query: 425 tatatagttcctagtccaaattcgtagtcctttgaaacatatagcccatcaagcatgggc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatatagttcctagtccaaattcgtagtcctttgaaacatatagcccatcaagcatgggc 684

                                                                       
Query: 485 cattgctatggggagagttttaaaaggggctattttgtttcaaattaatatgaaaaagtt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cattgctatggggagagttttaaaaggggctattttgtttcaaattaatatgaaaaagtt 744

                                                                       
Query: 545 gtctgaaaaaaaatctaaggacaaaacatgaatatataccacctctaagctatctcctta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtctgaaaaaaaatctaaggacaaaacatgaatatataccacctctaagctatctcctta 804

                                                                       
Query: 605 gtcagatatctagaagcaatcatgagcctttgctgtnaaatgaattccctgaaggcacaa 664
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 805 gtcagatatctagaagcaatcatgagcctttgctgtaaaatgaattccctgaaggcacaa 864

                  
Query: 665 aaacaaa 671
           |||||||
Sbjct: 865 aaacaaa 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no290_b24.g1 MSMg01no290_b24.g1 CHROMAT_FILE:
MSMg01no290_b24.g1 PHD_FILE: MSMg01no290_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:35 2005
         (294 letters)



>mm_chrX_108739997_108740690
          Length = 694

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accttatcctgtaaatgtccactcactctgttccctctctaaatgggtcttcgcaatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 accttatcctgtaaatgtccactcactctgttccctctctaaatgggtcttcgcaatttt 435

                                                                       
Query: 61  aatgctaattgatttttattaccttatttattttcttagttaaaatatgctcttaggagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aatgctaattgatttttattaccttatttattttcttagttaaaatatgctcttaggagt 375

                                                                       
Query: 121 tttaaaaagaactgtgcttctttcagaagcttctacttaataggcattgtcataataggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 374 tttaaaaagaactgtgcttctttcagaagcttctacttaataggcattgtcataaaaggt 315

                                                                       
Query: 181 cgcctttagcattgctaatgcttagaccccagcacatttctagcaaataaaatcaggttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cgcctttagcattgctaatgcttagaccccagcacatttctagcaaataaaatcaggttt 255

                                                                 
Query: 241 tatttagttcaatttaaagaatgaatcagctttggatgtcctctaaatgaatta 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tatttagttcaatttaaagaatgaatcagctttggatgtcctctaaatgaatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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