BAC Information

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BAC

Clone NameMSMg01-291D01
ChromosomeX (Build37)
Map Location 151,782,991 - 151,783,468
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434879, LOC667313, 4930542N07Rik, EG434881, LOC100040899, LOC667331, LOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4
Downstream geneLOC667394, Ptchd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291D01.T7 (MSMg01no291_d01.b1)MSMg01-291D01.TJ (MSMg01no291_d01.g1)
ACCAG420259AG420260
length740731
length of high quality
(start - end)
483 (46 - 528)190 (137 - 326)
definitionCHROMAT_FILE: MSMg01no291_d01.b1 PHD_FILE: MSMg01no291_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:55 2005CHROMAT_FILE: MSMg01no291_d01.g1 PHD_FILE: MSMg01no291_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGGCCTCTTCCATGCTAGGCTAATGTTCCACCACTGAGCCATGT
CTCCTGCCTTTCTAAAAGCATGTGAAAGAAGTAATTTAAGTTATACACTA
AGAATTTTTGCTTAGAGAACAGCTTAGAAAACACCAAACATGTCAAATAT
TCACCTATTCAGGGGCCTGGGGAAGGTAGATTGAATGTTAGAAATCTTAA
AGGTTTGTTGTTGTTTTTAATTAAATTTGATTTTAGAAAAATTTACACAG
ATATACAGTGCATATTGACCATTCTCACCCCTTACCCTTTCCCATTTCTC
TACCCTTCCTGTGTGTCCCATTCTTCACCACAAGTCTCTCTAGAGTGCTC
ATGTCTGCTAGTTTTGTCTTGCGATGCATTGTGACTAGCGAGGGCTGTCT
GTGCTTCTACGGGTTCAAACTATCCATTGAAGCCTGGCTGTATCCATTCT
AGCGGATGCCATTTCACAAACTTTCACCTTGTTGTCCAGCTTTTTATACA
CTTTCTGCTCCAACTTTTTCCAATGTTTCCCGAGACTACCAGGAGGCCGT
GAATTTTCGCATGCACCCAAGAGTGTTCTTTGAACTTTCTGATCCTTTTA
CCTTCATCTCCCCGAGGATTAATACTACCGCGTTTGGACTGCCTTGGTCT
AACGCTATGTCGGGGCATGGAACCTCACGGAACTTCCTCC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCAGAAATTCCTGATCTTTCCAAAACTTTTATCA
TGAATGGGTGTTGGATCTTTTTTCACGCTTTTATATGCATCTAACGAGAT
GATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGA
TGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACT
TGGTCAGGATGGATGATTTCTTTAATGTGTTCTTGGATTCGGTTAGCAAG
AATTTTATTAAGGATTTTTGCATCTATATTCATAAGAGAAATTGGTCTGA
AGTTCTCTATCTTTGTTGTTTCTTTCTGTGCTTTACGTATCAGAGTAATA
GTGGCTTCATAAAATGAGTCGCGTAGAGTACATTCTATTTCTATCTTGTG
AAATAGTTTGTGCAGATCTGGAATTACATCCTTCTTTGAAGGTCTGATAG
AACTCTGCACTAAACCCATCTGGTCCTGGGTTTTTTTTGGCTGGGAGACT
ATTTATAACTGCTTCTATTTCTTTCGGGGATACGGAACTGCTTAGAAAGT
CTATTTGATCCTGATTCACCTTTGGCACCTGTTATCTGTTCCGAAACTTG
TCCATCTCGTCCACGTATTACAGTTTTGACGATGATAGCCCTTTTACCGT
AGGATCCGATGTTTGTTTCTTATTTCTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_d01.b1 MSMg01no291_d01.b1 CHROMAT_FILE:
MSMg01no291_d01.b1 PHD_FILE: MSMg01no291_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:55 2005
         (483 letters)



>mm_chrX_151782787_151783668
          Length = 882

 Score =  857 bits (443), Expect = 0.0
 Identities = 470/479 (98%), Gaps = 1/479 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagggcctcttccatgctaggctaatgttccaccactgagccatgtctcctgcct 64
           |||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 gaattcagggcctcgtgcatgctaggctaatgttctaccactgagccatgtctcctgcct 264

                                                                       
Query: 65  ttctaaaagcatgtgaaagaagtaatttaagttatacactaagaatttttgcttagagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctaaaagcatgtgaaagaagtaatttaagttatacactaagaatttttgcttagagaa 324

                                                                       
Query: 125 cagcttagaaaacaccaaacatgtcaaatattcacctattcaggggcctggggaaggtag 184
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagcttaggaaacaccaaacatgtcaaatattcacctattcaggggcctggggaaggtag 384

                                                                       
Query: 185 attgaatgttagaaatcttaaaggtttgttgttgtttttaattaaatttgattttagaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attgaatgttagaaatcttaaaggtttgttgttgtttttaattaaatttgattttagaaa 444

                                                                       
Query: 245 aatttacacagatatacagtgcatattgaccattctcaccccttaccctttcccatttct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatttacacagatatacagtgcatattgaccattctcaccccttaccctttcccatttct 504

                                                                       
Query: 305 ctacccttcctgtgtgtcccattcttcaccacaagtctctctagagtgctcatgtctgct 364
           ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 ctacccttc-tgtgtgtcccattcttcgccacaagtctctctagagtgctcatgtctgct 563

                                                                       
Query: 365 agttttgtcttgcgatgcattgtgactagcgagggctgtctgtgcttctacgggttcaaa 424
           |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 564 agttttgtcttgtgatgcattgtgactaacgagggctgtctgtgcttctacgggttcaaa 623

                                                                      
Query: 425 ctatccattgaagcctggctgtatccattctagcggatgccatttcacaaactttcacc 483
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 624 ctatccattgaagcctggctgtatccattctagcggatgtcatttcacaaactttcacc 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 882
Length adjustment: 10
Effective length of query: 473
Effective length of database: 872
Effective search space:   412456
Effective search space used:   412456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)