BAC Information

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BAC

Clone NameMSMg01-291O10
ChromosomeX (Build37)
Map Location 79,711,502 - 79,711,799
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667799, EG629310
Downstream geneDmd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291O10.T7 (MSMg01no291_o10.b1)MSMg01-291O10.TJ (MSMg01no291_o10.g1)
ACCAG420769AG420770
length695729
length of high quality
(start - end)
299 (58 - 356)299 (431 - 729)
definitionCHROMAT_FILE: MSMg01no291_o10.b1 PHD_FILE: MSMg01no291_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:48 2005CHROMAT_FILE: MSMg01no291_o10.g1 PHD_FILE: MSMg01no291_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAAAAAAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCAGTATAATTAAAGATATATAAATTTCCTATTTT
AGATATTTAACTGTGTTTTCCAGTATTTAAACCCATAATTAGAAAAATAT
GCAAACAACTTTTACTTGACTTTTTATTTGGTTGAATTTGATTATTCACT
TTCCCAAATTTCTAACACATATTAAAGTATTTATTTATTGAGATACATAT
GTGTATCTTCATTACACTAATTTCTCTGCCTACCTCCACCTCCTCATAGT
CAGACTATAACCCACAACAAGAACACTTCTGAATTCAGTTAGTGCTTTAC
ATATAGTAAAATATTTCTTTTTACCACCCTCCACAGAGCATACTCATGAA
GAAAATTATTTCTTCCTTTCCCCCAAAAAATCAAGAACTATTGAAACCCT
CCCTTAAGTGAAGAAAATTTATGGGCCTTTTCCCAAAAAAGGCTGAACGG
AAATTAAAAGGTTTTTAAAAAAAAAAAGGGGGGGGGTACAATATGTGTTT
TCCCCAAAAGGGGGAAAGAAAAACCTTTGTTTTTTCTTTTCCCCAAAAAA
AAAAAATGGGTTTTTTTTTTTTCACCCCCCCCTCTTTTTTTTTTATAAAA
AAACAATACCCTTCCCAAAAAAAATAAATTTTTTTGTCGGGCCGC
GAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGTACCTGAAATTATGCCCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCC
AGCAATATTTTTTCTGGGCCTACACCCAGAAGATGCCCCAACAGGTAAGA
AGGACACATGCTCCACCACGAACATAAAAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGTACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGATT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACAATTTCC
TAAACACATGAAACTCACGAAAAATGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_o10.b1 MSMg01no291_o10.b1 CHROMAT_FILE:
MSMg01no291_o10.b1 PHD_FILE: MSMg01no291_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:48 2005
         (299 letters)



>mm_chrX_79711298_79711999
          Length = 702

 Score =  530 bits (274), Expect = e-155
 Identities = 292/298 (97%), Gaps = 3/298 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtataattaaagatatataaatttcctattttagatatttaactgtgttttcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtataattaaagatatataaatttcctattttagatatttaactgtgttttcc 264

                                                                       
Query: 65  agtat-ttaaacccataattagaaaaatatgcaaacaacttttacttgactttttatttg 123
           ||||| | |||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtatctaaaaatcataattagaaaaatatgcaaacaacttttacttgactttttatttg 324

                                                                       
Query: 124 gttgaatttgattattcactttcccaaatttctaacacatattaaagtatttatttattg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttgaatttgattattcactttcccaaatttctaacacatattaaagtatttatttattg 384

                                                                       
Query: 184 agatacatatgtgtatcttcattacactaatttctctgcctacctccacctcctc-atag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 agatacatatgtgtatcttcattacactaatttctctgcctacctccacctcctccatag 444

                                                                     
Query: 243 tcagactataaccc-acaacaagaacacttctgaattcagttagtgctttacatatag 299
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcagactataaccccacaacaagaacacttctgaattcagttagtgctttacatatag 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 702
Length adjustment: 9
Effective length of query: 290
Effective length of database: 693
Effective search space:   200970
Effective search space used:   200970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)