BAC Information

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BAC

Clone NameMSMg01-293J16
ChromosomeX (Build37)
Map Location 42,654,440 - 42,654,801
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC637141, Wdr40c, Wdr40b, LOC665585, 1110059M19Rik
Downstream geneLOC100040038, EG385346, LOC100040075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293J16.T7 (MSMg01no293_j16.b1)MSMg01-293J16.TJ (MSMg01no293_j16.g1)
ACCAG422009AG422010
length741745
length of high quality
(start - end)
360 (382 - 741)362 (384 - 745)
definitionCHROMAT_FILE: MSMg01no293_j16.b1 PHD_FILE: MSMg01no293_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:04 2005CHROMAT_FILE: MSMg01no293_j16.g1 PHD_FILE: MSMg01no293_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCTGCCCTGAGCCCCATCTTTTAAGGGGGCTATTTGATTT
TCTTAAGTCCACCTTCTTGAGTTCCTTATAAATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCATTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACTGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCAATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGGCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAATTTTCTGTGTCTCTGGTTTTATGTGGAGTTCCTTGAT
CCACTTAGATTTGACCTTACGACAAGGAGAGAGGAATGGGTTGATTCGCA
TTCTTCTACATGATAACAACCAGTTGAGCCAGCACCATTTGTTGAAAATG
CTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGT
CTACTTGCCTGTCACTATACCAGTAACATGCATTTTTTATAACAATTGCT
CTCTAGTAAAGCTTTAGGTCAGGCATGGTGATTTCACCAGAGGTATTTTT
ATCCTTGAGAAGAGCTTTTACTATCCTAGGTTTTTTGTTAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAAAAATCAAAACAAAACAAAAT
ACTTGAATTTATGCTAAGATATCTCTCACAAGCATCATTGAAGGGAAGAA
ATGAGTAATTTTTTTAAAGAATAATGAAAAATCACATTTAAAGTCAGCAC
AATTTCATTTTAATTTGTAGGAATGAGGCAGAATTTGCACTGTCTCATTT
GAATTTAGACAGGGTAATGAAGTTTGAAATCCAGTTTTAAGAAAAAGGAT
TCTTTTTGGTTTTACAGAGTAGCCACTCTGAAGCTAGCGCAGAGGCGACA
GACATTACATTATCATTATACTAAGAAAATAGAGATGAATATTTTCACCT
AGTGTAGCAGAGGGAGAAACATAGCAATGAGCTCTGAATTCCAAACTCAT
TTTTCCTCTTTCTAGATTATCACTTACCTTGTTGTAGCCTTATATTTATA
TATGGTTTTAAAAGTCCTTAATGTACTTCATCATACATTAATTGAAAGAG
CAAATTGCTATCTATAAGAATCCACTTGTGATTGATATAAAATAAAAAGT
TTCTGAATACAGAATTGTTAGTTCTCATGTCATTTTTATTCTAACACCTC
TTCTGTCAGTTCTTCTATCATCCTAATCTTCAAACACATGCACTCTGATT
TCTTCAGTAGTTCCCAATTAGTAGGCACATATTAAGAAATCGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_j16.g1 MSMg01no293_j16.g1 CHROMAT_FILE:
MSMg01no293_j16.g1 PHD_FILE: MSMg01no293_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:04 2005
         (362 letters)



>mm_chrX_42654240_42655001
          Length = 762

 Score =  692 bits (358), Expect = 0.0
 Identities = 361/362 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatgaatattttcacctagtgtagcagagggagaaacatagcaatgagctctgaattcca 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gatgaatattttcacctagtatagcagagggagaaacatagcaatgagctctgaattcca 503

                                                                       
Query: 61  aactcatttttcctctttctagattatcacttaccttgttgtagccttatatttatatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aactcatttttcctctttctagattatcacttaccttgttgtagccttatatttatatat 443

                                                                       
Query: 121 ggttttaaaagtccttaatgtacttcatcatacattaattgaaagagcaaattgctatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggttttaaaagtccttaatgtacttcatcatacattaattgaaagagcaaattgctatct 383

                                                                       
Query: 181 ataagaatccacttgtgattgatataaaataaaaagtttctgaatacagaattgttagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ataagaatccacttgtgattgatataaaataaaaagtttctgaatacagaattgttagtt 323

                                                                       
Query: 241 ctcatgtcatttttattctaacacctcttctgtcagttcttctatcatcctaatcttcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctcatgtcatttttattctaacacctcttctgtcagttcttctatcatcctaatcttcaa 263

                                                                       
Query: 301 acacatgcactctgatttcttcagtagttcccaattagtaggcacatattaagaaatcgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 acacatgcactctgatttcttcagtagttcccaattagtaggcacatattaagaaatcgt 203

             
Query: 361 ag 362
           ||
Sbjct: 202 ag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)