BAC Information

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BAC

Clone NameMSMg01-294B12
ChromosomeX (Build37)
Map Location 121,268,282 - 121,268,627
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294B12.T7 (MSMg01no294_b12.b1)MSMg01-294B12.TJ (MSMg01no294_b12.g1)
ACCAG422358AG422359
length743739
length of high quality
(start - end)
320 (48 - 367)290 (78 - 367)
definitionCHROMAT_FILE: MSMg01no294_b12.b1 PHD_FILE: MSMg01no294_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:41 2005CHROMAT_FILE: MSMg01no294_b12.g1 PHD_FILE: MSMg01no294_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGTACTTCTTTGGCTAATATCTTCTTATTACAGTTCATTTTAC
TTTGAGATTTTATTTGTATAAAAATTGATAAAATGTTGAATAGATTCACA
AAAAGAAATCTTAGTAATTTACTGTTTATTTACTATGTCATGGACGTTTT
AATCATTATCATAGAGTATAAAATAAAATGTGAATGTGAGAAAGAAATTT
AGAGAACGAATTGGAAGGTGAGGATGGAAGGTGTCAAAATTTGGGTTTTG
TTGTTATGAAGAGACACTATGACCACAGTAATTCCTATAAAGCAAAAAAC
TTTGCTGGGGCTGACTTATTGTTTCACACCCCCACCTTCATTATTGTCTT
GCCAAGAAGTATGGTAGTTTTCAGGAAGATCTTTTGATAGAGCCGGAGAT
GAAGCCGAGGGCTCCTAATCTTCATCCACAGGCAGCAAAAAGAGGCTGTC
TACACACTGGCCAGACATGAGCATATATGATCTCAAAACCTGCCTCTAGT
GACAGCCTTCCTTGATTGAGCAGCAGAGTAGAGCTGGCCCTAGATTTGGG
GCTTTCTGATCAGCTGCCTGGTAGGCATGGGCATGGGAAACTTAATCCTG
CCTCTTGTTTGCTGTGCAGTGGTTTGGACAAAGGAAAGATCCCTTCCCTC
CTTTTTACCCTCCCCACCCTTGTCACGAAAGCTGTCCCTGATG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTTACAAGTATTTTATTGAGT
ATTTTTAAATCGATGTTTATAAGGGCACCTGGTCCGAAATTCTCTTTCTT
TGTTGAGTCTTTGTGGGACTTAAGTCTCACATTGACTGTATTCCCATAAA
GTAAAATTTGTCATTTTTCCTTCTGTTTTTATCTAGTGAAATAATTTGTG
TATCAGTATTAGCACTTTTTTGAAAGTATGGTATAATCCTGCTCTAAAAC
CATCTGACCTTGTCTGGTTTTGTTTGGGAGATATTAAATGATAGGTTATA
TTTCCTTTGGCTATAGGACTATTGAAGCTGATCTTTATTCAGCTTTACCA
AATTGTATGTATTGAGAAAATTGTCCTTTTTTTTTCTATTTTGGTTTTCC
ATGTTTCTGGAGTACAGGGTTTGAAGTGAAACACAATGATCTCGGTGTCT
GTTGTTATGTCTTCCTCTTCATTTCTAATTTTGTTAATTTGTATGCTTTC
GCTCTCTTTCTTTTATTTAGTTTTGAAAAAAGTTTTGTCCATCCTGATGA
TTTCCTCANAGAACCAAATATTTGTTGCCTGATTCTTTGCCTTTGTCTCT
TTGATTTTTTTAATGATTTTAGCTTTGAGTTTGAATATTTCCTGCTGCCT
ATTTATCTTTGGGGGCTTGTGCTTCTATTTGCACCAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_b12.b1 MSMg01no294_b12.b1 CHROMAT_FILE:
MSMg01no294_b12.b1 PHD_FILE: MSMg01no294_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:41 2005
         (320 letters)



>mm_chrX_121268104_121268823
          Length = 720

 Score =  400 bits (207), Expect = e-116
 Identities = 299/349 (85%), Gaps = 35/349 (10%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtacttctttggctaatatcttcttattacagttcattttactttgagattt 63
           |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 524 ggaaatctgtacttctttggctaatatcctcttattatagttcattttactttgacattt 465

                                                                       
Query: 64  tatttgt------------------------------ataaaaattgataaaatgttgaa 93
           |||||||                              ||||||| |||||||||||||||
Sbjct: 464 tatttgtattcgaaacaagaacagtgttacatttgtgataaaaa-tgataaaatgttgaa 406

                                                                       
Query: 94  tagattcacaaaaagaaatcttagtaatttactgtttatttactatgt-catggacgttt 152
           || ||| ||||||||||||||||||||||||||||||||||||||| | | ||||| |||
Sbjct: 405 taaattaacaaaaagaaatcttagtaatttactgtttatttactat-tacctggaccttt 347

                                                                       
Query: 153 taatcattatcatagagtataaaataaaatgtgaatgtgagaaagaaatttagagaacga 212
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 346 taatcattatcatagagtataaaataaaatgtgaatgtgagaaagaaatgtagagaaaga 287

                                                                       
Query: 213 attggaaggtgaggatggaaggtgtca-aaatttgggttttgttgttatgaagagacact 271
           |||||| ||| |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 286 attggagggtaaggatggaaggtgt-agaaatttgggttttgttgttatgaagagacact 228

                                                            
Query: 272 atgaccacagtaattcctataaagcaaaaaactttgctggggctgactt 320
           ||||||||||||||||||||||||||||  ||||||||||||| |||||
Sbjct: 227 atgaccacagtaattcctataaagcaaagcactttgctggggcagactt 179


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)