BAC Information

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BAC

Clone NameMSMg01-295M05
ChromosomeX (Build37)
Map Location 17,595,750 - 17,596,035
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043063, Efhc2, Fundc1, EG278181, EG668994, EG436196, EG331391
Downstream geneDusp21, LOC100043951, Utx, LOC100043952, 4930578C19Rik, LOC100043098, EG628855, LOC385333
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295M05.T7 (MSMg01no295_m05.b1)MSMg01-295M05.TJ (MSMg01no295_m05.g1)
ACCAG423566AG423567
length748752
length of high quality
(start - end)
313 (49 - 361)287 (79 - 365)
definitionCHROMAT_FILE: MSMg01no295_m05.b1 PHD_FILE: MSMg01no295_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:47 2005CHROMAT_FILE: MSMg01no295_m05.g1 PHD_FILE: MSMg01no295_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTT
GATTTTTGACAAAGGAGCTAAAACCCTCCAGTGGAAAAAAAAGACAGCAT
TTTCAACAAATAGTACTGGCACACTGGTGGTTATTTTGCTCTATTAATGG
GTACCTCCGTTAGCTGTTTGTCTTGGGTTTGAGATCTAAAATTACTATAG
TTTAAATGTATATGCCCCAAATAGGTTTGTGTATTTGAACACCTCGTCCC
CAGCTGGTGGCACCAGTTTGGGAGGTTATAGAATATTTGAGAGGTATTTC
CTCTCTGGAGGATTTATTTAGCTCCCACCACCCCTTGAGGTTTTATATTC
TGGCTTTCTTGTCAGCTCTACTTCCTGAATATGGAAACAATACGACTAGC
CTCCTTATACTGATACCATGCTTTCTCCACCAGGATGGACTAGATTCTCT
TGAGAGAGGATCTATAGACCAAAATAAACTTATCTACAGTTAAGATACTC
CTTTTTGGGGGTTAGTCACAGCAATACGTTTATGGGATATTGATTACTAA
ACTCTTAACTGAAAAGGAAGAAAGTAAAAGGAAGAAAATAGAGGAAAGGA
AGTTGCCTTGTGGCCTATTTGCTTGTTAATTAGTTTGGGGCTTTTGCCTT
TGTTTTTAAGCTTTGTGTTGACCCCGAGCTCTTGTCTTTTTCTTCTTT
ATTCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCCCGGATTTTGAGTTATC
TGGCTAGTTTTAAAATATTAAACTGCCTAGTGTTTTCCATCCACAGTGAT
AAGGTGGTATAGAGAAGAAAGCAGGTGGCCAGGGCAGTTATTGGCAGCTT
GAAGAAGATAGCCACGGGATGCTGCTGGAGTGTGGACAACAGCTTCCAGG
TATCCCCTGGTTGGGAGATGATCACGTTCATGTTGGATTTAGGGGAACTG
AACCAGGAGAGGCCATAGAGTTGGCCACTGCCCTGGTCAAGGAGATATTG
TGGTTTTAAAATTATTTTTACACCCCCTCCTCCTTCAGACATGCCCACAG
GACAATCTAATCTAGGACCCTCTTCAAAAAGAACTTTCTTCTTAGATGAC
TCTAGGCTATGTTAAATTGAAAGTTAAGGTTGACCACATTAGATCTTATT
CAGTCATTCTGTTCATGGATATCTAGATATTTTTCAGTCTTTGCCTATTA
TCAGCATAGCTAGTAAGAGTACTCTAGTACAAATATTTGTAGATATATGT
GCTTCAATTTTTCTTGACTACATATCTGAGAGGAATTACTAGATCACAGG
AAAACTTTATGTTGAACTTTTAAAAGATCCTTCTCCAAGCAGATGCATTA
TCTCTCATGCCAATGTCCCTGACACATTTAAAAGCAAGTTGTTCTACAGC
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_m05.g1 MSMg01no295_m05.g1 CHROMAT_FILE:
MSMg01no295_m05.g1 PHD_FILE: MSMg01no295_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:47 2005
         (287 letters)



>mm_chrX_17595550_17596236
          Length = 687

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgcccggattttgagttatctggctagttttaaaatattaaactgcctagtgttttcc 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tttgcccagattttgagttatctggctagttttaaaatattaaactgcctagtgttttcc 427

                                                                       
Query: 61  atccacagtgataaggtggtatagagaagaaagcaggtggccagggcagttattggcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atccacagtgataaggtggtatagagaagaaagcaggtggccagggcagttattggcagc 367

                                                                       
Query: 121 ttgaagaagatagccacgggatgctgctggagtgtggacaacagcttccaggtatcccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttgaagaagatagccacgggatgctgctggagtgtggacaacagcttccaggtatcccct 307

                                                                       
Query: 181 ggttgggagatgatcacgttcatgttggatttaggggaactgaaccaggagaggccatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ggttgggagatgatcacgttcatgttggatttaggggaactgaaccaggagaggccatag 247

                                                         
Query: 241 agttggccactgccctggtcaaggagatattgtggttttaaaatta 286
           || ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 246 agctggccactgccctgggcaaggagatattgtggttttaaaatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)