BAC Information

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BAC

Clone NameMSMg01-298M02
ChromosomeX (Build37)
Map Location 126,713,112 - 126,873,290
singlet/doubletdoublet
Overlap geneDiap2
Upstream geneLOC100040562, LOC100040570, LOC669120
Downstream geneLOC100040092, LOC665773, LOC665799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298M02.T7 (MSMg01no298_m02.b1)MSMg01-298M02.TJ (MSMg01no298_m02.g1)
ACCAG425719AG425720
length698789
length of high quality
(start - end)
544 (39 - 582)523 (129 - 651)
definitionCHROMAT_FILE: MSMg01no298_m02.b1 PHD_FILE: MSMg01no298_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:30 2005CHROMAT_FILE: MSMg01no298_m02.g1 PHD_FILE: MSMg01no298_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,872,747 - 126,873,290)(126,713,112 - 126,713,634)
sequence
ATTCCAAGAGGAGGNGCGGAATTCATAGACATTCCCATTTGTGTTTTTGA
AAGACTGGTTTGCAGTTGCTAATTTATCCACTCCTGTCCTGCCTCTTTTA
TACTAATGAGCTGCTGCTAAAATGAACTAAGGTGACAAAGAAGTTGTGTG
GTTTTCTACACATCACTGGGGCTTTCATGTCATAAATTCAGCATCCAAGA
GACCTCACTCAGGCACAAAAGCACTTGGATGTACCTTACAGCTCAAACTT
ACATGGCCAAAAGAAGCAAGATGGCATGATGGCATGTAAGACCACTGCAG
GTACAATATTTCTGAAGTAGGACCCTTAACAAAGGGCACAGGCTATTAAT
GCTTCTAGAAACATCATGTTTAATTCCTCTGTGAAAGATTTAGCAGCTTA
GTGGAAAGATGCAGCTAAAGGGAAAAAACAGTATGAAAGAAGAGCTCTGC
AAGGAAATTTGCTTAAACTAATATTAGAAAGAAAATAATTCAGAAATGGT
TGCCTCTAATAATCTCCTACCCCAAGGCTAGAAGAANAGGTCATAGCTAA
TTGGTACAAAAGTAGCTCTGCATACTTAGCAAGTGGTACCCAGTGATGAG
TTTCACCCAAACACTACCCTTTACCTGCAATTAAGTCATGACAGATATCT
CAAATTATAGCCCCTCCCCAAGAAGCGATAAAATAGCACACTTCAAAN
TTTTTTACTTTCCNNCCCCTTTTTTTCCCTCTTTTTCCCCCATTTTCTTT
TTNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAATAAGATAAGGTCTCTTT
GAACCTTACTTTCTCTTTAATCTTCAATTTAGATTTTAAAGAATGAAATA
TTAGGTGTCCTATCAATAAATTTAAATAGGAATGGGTTCGTCTGAACTAA
TGGCTGAGTAAAATGATGACATTTCTATAAGAAATATGATGATTTGGTAT
ATTACATTACACATTTTCATTTACATCATAGAGAGTAGAATTTTTATGAG
CAGTAACTCAGAAATGTGTGAAATGAGTTCGTGGAGCCATTCTCTCCATT
TAGGAAAATCCCTTAGCAGATACTGGTTTTAGTTGTTTTGTGGAATACCT
AGTAAAAGATTCTAAATTTTCTGTACCTTTTTCTTTAGTTTCAGCTCAAA
TACTCAAGAGCAACCTTGTAGCAATGGAACAAAGCATTCTTCATCTGGAG
AAAAACATCAAGAATTTCCCACCAGCAGAATCGCACCATGATAAGTTTGT
GGAAAAGATGATGATATCCTTTATATATTCAAGCATTTGTTTCTGTGTTT
GCATGTGTCTATCCATCTTTTTACTTTGTGGTTAGTTCTAGACTCACTAT
TCTGTAACATTAAATGAATCTGCGCGTATGCTGCTTTTTGCTTTTTTATT
AACAGAATAAATTTTAATTTCCCAGTGGTTTTGGAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_m02.b1 MSMg01no298_m02.b1 CHROMAT_FILE:
MSMg01no298_m02.b1 PHD_FILE: MSMg01no298_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:30 2005
         (544 letters)



>mm_chrX_126872547_126873490
          Length = 944

 Score = 1015 bits (525), Expect = 0.0
 Identities = 539/544 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtgtttttgaaagactggtttgcagttgctaatttatccactcctgtcctgcctcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttgtgtttttgaaagactggtttgcagttgctaatttatccactcctgtcctgcctcttt 685

                                                                       
Query: 61  tatactaatgagctgctgctaaaatgaactaaggtgacaaagaagttgtgtggttttcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tatactaatgagctgctgctaaaatgaactaaggtgacaaagaagttgtgtggttttcta 625

                                                                       
Query: 121 cacatcactggggctttcatgtcataaattcagcatccaagagacctcactcaggcacaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 624 cacatcactggggctttcatgtcataaattcagcatccaagagacctcactcgggcacaa 565

                                                                       
Query: 181 aagcacttggatgtaccttacagctcaaacttacatggccaaaagaagcaagatggcatg 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagcacttgggtgtaccttacagctcaaacttacatggccaaaagaagcaagatggcatg 505

                                                                       
Query: 241 atggcatgtaagaccactgcaggtacaatatttctgaagtaggacccttaacaaagggca 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atggcatgtaagaccactggaggtacaatatttctgaagtaggacccttaacaaagggca 445

                                                                       
Query: 301 caggctattaatgcttctagaaacatcatgtttaattcctctgtgaaagatttagcagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caggctattaatgcttctagaaacatcatgtttaattcctctgtgaaagatttagcagct 385

                                                                       
Query: 361 tagtggaaagatgcagctaaagggaaaaaacagtatgaaagaagagctctgcaaggaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagtggaaagatgcagctaaagggaaaaaacagtatgaaagaagagctctgcaaggaaat 325

                                                                       
Query: 421 ttgcttaaactaatattagaaagaaaataattcagaaatggttgcctctaataatctcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgcttaaactaatattagaaagaaaataattcagaaatggttgcctctaataatctcct 265

                                                                       
Query: 481 accccaaggctagaagaanaggtcatagctaattggtacaaaagtagctctgcatactta 540
           |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 264 accccaaggctagaagaaaaggtcatagctaattggtacaaaagcagctctgcatactta 205

               
Query: 541 gcaa 544
           ||||
Sbjct: 204 gcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no298_m02.g1 MSMg01no298_m02.g1 CHROMAT_FILE:
MSMg01no298_m02.g1 PHD_FILE: MSMg01no298_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:30 2005
         (523 letters)



>mm_chrX_126712912_126713834
          Length = 923

 Score =  980 bits (507), Expect = 0.0
 Identities = 519/523 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaataagataaggtctctttgaaccttactttctctttaatcttcaatttagatttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaataagataaggtctctttgaaccttactttctctttaatcttcaatttagatttta 260

                                                                       
Query: 61  aagaatgaaatattaggtgtcctatcaataaatttaaataggaatgggttcgtctgaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaatgaaatattaggtgtcctatcaataaatttaaataggaatgggttcgtctgaact 320

                                                                       
Query: 121 aatggctgagtaaaatgatgacatttctataagaaatatgatgatttggtatattacatt 180
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 321 aatggctgagtaaaatgatgacatttctatattaaatatgatgatttggtatattacatt 380

                                                                       
Query: 181 acacattttcatttacatcatagagagtagaatttttatgagcagtaactcagaaatgtg 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacattttcatttacctcatagagagtagaatttttatgagcagtaactcagaaatgtg 440

                                                                       
Query: 241 tgaaatgagttcgtggagccattctctccatttaggaaaatcccttagcagatactggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaatgagttcgtggagccattctctccatttaggaaaatcccttagcagatactggtt 500

                                                                       
Query: 301 ttagttgttttgtggaatacctagtaaaagattctaaattttctgtacctttttctttag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttagttgttttgtggaatacctagtaaaagattctaaattttctgtacctttttctttag 560

                                                                       
Query: 361 tttcagctcaaatactcaagagcaaccttgtagcaatggaacaaagcattcttcatctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcagctcaaatactcaagagcaaccttgtagcaatggaacaaagcattcttcatctgg 620

                                                                       
Query: 421 agaaaaacatcaagaatttcccaccagcagaatcgcaccatgataagtttgtggaaaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaaaacatcaagaatttcccaccagcagaatcgcaccatgataagtttgtggaaaaga 680

                                                      
Query: 481 tgatgatatcctttatatattcaagcatttgtttctgtgtttg 523
           ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 tgatgatatcctttatataatcaagcatttgtttctgtgtttg 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)