Query= MSMg01no299_a19.b1 MSMg01no299_a19.b1 CHROMAT_FILE:
MSMg01no299_a19.b1 PHD_FILE: MSMg01no299_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:52 2005
(645 letters)
>mm_chrX_134199245_134200289
Length = 1045
Score = 1004 bits (519), Expect = 0.0
Identities = 588/642 (91%), Gaps = 48/642 (7%)
Strand = Plus / Minus
Query: 4 ggaattcaaaattcctttccagcaaatacaatatcctttcatttcgaagcaagggaaagg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggaattcaaaattcctttccagcaaatacaatatcctttcatttcgaagcaagggaaagg 626
Query: 64 aggagcccatctactatagttcttagctattcttgtgtatgggataagtcccaaatcaac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggagcccatctactatagttcttagctattcttgtgtatgggataagtcccaaatcaac 566
Query: 124 attaagaaggtgtaatcattcttaattgttctctcatttttcagtgttgtggatagaaat 183
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 565 attaagaaggtgtaatcattcttaattgttctgtcatttttcagtgttgtggatagaaat 506
Query: 184 taatccaaggtgatagcaagcattctaatttctgtatgcagacgatgacacagaactagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taatccaaggtgatagcaagcattctaatttctgtatgcagacgatgacacagaactagg 446
Query: 244 gagaattcacacataaattgtttgcagacttttcagcttttaagctaatgaagtatcttc 303
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 gagaattcacacataaattgtttgcagacttttcagcttttaaactaatgaagtatcttc 386
Query: 304 attagtataaatctctacacatttctaatttaaaagaaccagtgtcatagaggactttaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attagtataaatctctacacatttctaatttaaaagaaccagtgtcatagaggactttaa 326
Query: 364 tatatcaatcatattgcatattactgatattctacaacaaccaaagtaatgaacttaatg 423
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtatcaatcatattgcatattactgatattctacaacaaccaaagtaatgaacttaatg 266
Query: 424 ctcactgatacactgttctttgggtataactaaaaggaatggattttcgttacatagatt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcactgatacactgttctttgggtataactaaaaggaatggattttcgttacatagatt 206
Query: 484 tcctctctctctctcttctctctctctctccctccctccctccctctctctctctctctc 543
|||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 205 tcctctctctctctcttctctctctctctccctccctccctccccc-c------------ 159
Query: 544 tctctctctctctctctctctctctctctctctctctctctctcacatacacacncatgt 603
||||||||||||||||||| |||||
Sbjct: 158 -----------------------------------ctctctctcacatacacacacatgt 134
Query: 604 acaaagacacacttgtaaagttcatcatatccaaggatcatg 645
||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 133 acaaagacacacttgtaaagttcatcaaatccaaggatcatg 92
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_a19.g1 MSMg01no299_a19.g1 CHROMAT_FILE:
MSMg01no299_a19.g1 PHD_FILE: MSMg01no299_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:52 2005
(678 letters)
>mm_chrX_134047074_134048151
Length = 1078
Score = 1274 bits (659), Expect = 0.0
Identities = 673/678 (99%)
Strand = Plus / Plus
Query: 1 cagaccagccttggctccaaagaaagttccacaccaacctggaatacacagtgagaccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaccagccttggctccaaagaaagttccacaccaacctggaatacacagtgagaccaa 260
Query: 61 gtctcaataaaacaaaaactaaacataagtcaaaaatgttgggagaggtttttcacaacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctcaataaaacaaaaactaaacataagtcaaaaatgttgggagaggtttttcacaacg 320
Query: 121 ttcccagagagttgacctgaagttttgaatctagcagtaccagagttgaccacagaatca 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 ttcccagagagttgacctgaagttttgaatctagcagtaccggagttgaccacagaatca 380
Query: 181 gggttctgactccagtgatagaggaggttagcacatgactcttttggttctagccagttc 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagttctgactccagtgatagaggaggttagcacatgactcttttggttctagccagttc 440
Query: 241 aaagagtttggctctctttggctactctgatgatcatgtacccttcaactgtggctgtca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagagtttggctctctttggctactctgatgatcatgtacccttcaactgtggctgtca 500
Query: 301 caagtcaaactagatcatgtcagtaactgcacattgggatgtaggatttaccagattctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagtcaaactagatcatgtcagtaactgcacattgggatgtaggatttaccagattctg 560
Query: 361 cgagtgtacttcatgtagacattcttttagaagactcatagaaaacaaaacaaccagaat 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgagtgtacttcatgtagacatccttttagaagactcatagaaaacaaaacaaccagaat 620
Query: 421 aggaagaaggggaagagtagcagtgcattataaaagtcttttattttctaggggaccaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggaagaaggggaagagtagcagtgcattataaaagtcttttattttctaggggaccaga 680
Query: 481 acttttgaaaaaatgccagaattaacaatacactttgaggtcacttaagtcttaatactg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acttttgaaaaaatgccagaattaacaatacactttgaggtcacttaagtcttaatactg 740
Query: 541 ctaacatactatgcacccagactatttgcttaatcatcctttatgagaaccatataacaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctaacatactatgcacccagactatttgcttaatcatcctttatgagaaccatataacaa 800
Query: 601 accatttttttcctgaagcctgaatgttttatttggtaatcatggaagagttttttccag 660
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 801 accatttttttcctgaagcctgaacgttttatttggtaatcatggaagagttttttccag 860
Query: 661 agaanaacattttacata 678
|||| |||||||||||||
Sbjct: 861 agaaaaacattttacata 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
