BAC Information

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BAC

Clone NameMSMg01-300N05
ChromosomeX (Build37)
Map Location 134,389,019 - 134,389,308
singlet/doubletsinglet
Overlap geneIl1rapl2
Upstream geneRab9b, 1700014N06Rik, LOC621984, LOC100034363, 4930488E11Rik, LOC666244, 2810402A17Rik, Zcchc18, BC031748, LOC666277, LOC436231, LOC666288, LOC100041260, LOC100041272, LOC669737, Esx1, EG666303
Downstream gene1700025D03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300N05.T7 (MSMg01no300_n05.b1)MSMg01-300N05.TJ (MSMg01no300_n05.g1)
ACCAG427205AG427206
length728734
length of high quality
(start - end)
525 (47 - 571)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no300_n05.b1 PHD_FILE: MSMg01no300_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:04 2005CHROMAT_FILE: MSMg01no300_n05.g1 PHD_FILE: MSMg01no300_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCATTTATTCCTTGACAAAGTTATCACTGAGTAGAGTGTTGTC
CAGCTTCCATGTCAACTGTGGCTTCCTATTATTTATGTTGTTATTGAAGA
TCAGCCTTATTCCTTGGTGATCTGATTGGATGCATGGGATTATTCCAGTG
TTCTTGTATATGTGGAGGCCTGTTTTGTGACGGATTATACGGTCAATTTT
GTACAAAGTATCATGAAATTCCGAGAAGAAGGTATATTCTTTTGTTTTAG
GATAAAATGTTCTACAGATATCTGTTAAATCCATTTGTTTCATAACTTCT
GTTAGTTTCACTATGTCTCTGTTTAGTTTCTTTTTCCATGATCTGTCCAT
TGCTGAAAGTGAGTGTTGAAGTCTCCCACTATTATTGTGTGCAGTGCAAT
ATGTGTTTTGAGTCTATTAATATTAAGAGATATTGACAAATAAAAGATTG
TTGCTGAGTTCTATAGGCTTCTTGTATGTTCATGGGCATATCTTTCTTTA
TGTTAGGGAAGTTTTCTTCTACTGTTCTGCGGAAGATACTTACTGACCCT
TTAATTTGTGAATCTTTGCTCTCCTCCATACCTATTATCCTTAGATCTGG
TCTTCTCATTGCGTTCTGTCACCCCTGTAGCTTTTTTTCCCGATTTTCCT
GCTCTTTGCCTTTTTTTTTGCCTCTGCG
ACGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAATTCCTTGATATTACATTCATGT
TCCCATGGGTGCCCCTACTTGGGACCATTTATTTACCTGTGAATCTTTTT
GGTGTGGGAAGGCTAATACAAAAGGAAGGCAAAATAGTTAACGGTTTTGG
CTTTTTGGAAGAGACATGAAAGAACCCAAGTGAGATGTAAAGCTCTGCTA
ATTGAGTGCTAAAATATATACACAAGCAAAGTCAGAACAGAGAAGCCACA
TACAATAAAAAGAGCCCAAACTTCAGAACATAATTGACCTATCCTCAAAT
CCCAACTACAAAATATCTTTTGTCTCTCACCCCCCCGCACTAGGACTTAC
TTGATAGGATTTGTATGTTAACCCAGTGAGAAATGAGATAAAAGTAGATG
TTATCCCTAAATCCTAATTAATGTTAGGTGTTGTGATTCTCATGGACCAG
TATTATGAAGCTGTAATTTGGAGGCAGACTCATTATTCGGTCTGGATCGG
AAGGGAATTTATTCTAACTGGTGTACAAAGGCAGATGCAACGAACATAAT
GCACCTCAGATAATCATAGCCTATCACACACCTGCTCAGTACATCATACG
TAATACCATTTAGCGATTGCATCTTCAGGCATCAGCCTAAATATACCTGG
AGGTAATACTGCCTTGCCTTGCCACTCCCAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_n05.g1 MSMg01no300_n05.g1 CHROMAT_FILE:
MSMg01no300_n05.g1 PHD_FILE: MSMg01no300_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:04 2005
         (290 letters)



>mm_chrX_134388819_134389508
          Length = 690

 Score =  522 bits (270), Expect = e-153
 Identities = 285/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caattccttgatattacattcatgttcccatgggtgcccctacttgggaccatttattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 caattccttgatattacattcatgttcccatgggtgcccctacttgggatcatttattta 260

                                                                       
Query: 61  cctgtgaatctttttggtgtgggaaggctaatacaaaaggaaggcaaaatagttaacggt 120
           ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 cctgtgattctttttggtgtgggaaggctaatacaaaagggaggcaaaatagttaacggt 320

                                                                       
Query: 121 tttggctttttggaagagacatgaaagaacccaagtgagatgtaaagctctgctaattga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttggctttttggaagagacatgaaagaacccaagtgagatgtaaagctctgctaattga 380

                                                                       
Query: 181 gtgctaaaatatatacacaagcaaagtcagaacagagaagccacatacaataaaaagagc 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgctaaaatatatacgcaagcaaagtcagaacagagaagccacatacaataaaaagagc 440

                                                             
Query: 241 ccaaacttcagaacataattgacctatcctcaaatcccaactacaaaata 290
           ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 ccaaacttcagaacataattgacctatcctcaaatcccaaccacaaaata 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)