Query= MSMg01no302_o02.b1 MSMg01no302_o02.b1 CHROMAT_FILE:
MSMg01no302_o02.b1 PHD_FILE: MSMg01no302_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:37 2005
(607 letters)
>mm_chrX_79677135_79678142
Length = 1008
Score = 944 bits (488), Expect = 0.0
Identities = 494/496 (99%), Gaps = 1/496 (0%)
Strand = Plus / Minus
Query: 113 tgctattacttagtgattgttatatatgtttaataacaacaggaaaatcatatcaatagc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1008 tgctattacttagtgattgttatatatgtttaataacaacaggaaaatcatattaatagc 949
Query: 173 aggaatgtttcctaaaatgagtcccttgcagccttgcttaataagcgcacacatgtcgca 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 aggaatgtttcctaaaatgagtcccttgcagccttgcttaataagcgcacacatgtcgca 889
Query: 233 tattatataataatctgaaacaggccacttcaggatgaacacctgcttgttattagcttg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 tattatataataatctgaaacaggccacttcaggatgaacacctgcttgttattagcttg 829
Query: 293 tcccattatggctcctgacaaatgtttataaaatatcagtttccatatgctttttcaaat 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 tcccattatggctcctgacaaatgtttataaaatatcagtttccatatgctttttcaaat 769
Query: 353 atctctactgttagttatttctttgtcccctttatctgcacttccttcccatatctctcc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 atctctactgttagttatttctttgtcccctttatctgcacttccttcccatatctctcc 709
Query: 413 tgacttaagcacccacccatttactccctctttcccattcatattgccagtgttctacta 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tgacttaagcacccacccatttactccctctttcccattcatattgccagtgttctacta 649
Query: 473 tctgctataggatttttctccttctccattaatggcccctttcttggaattatcctatgg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tctgctataggatttttctccttctccattaatggcccctttcttggaattatcctatgg 589
Query: 533 taaggctaatgctcctacaagcacctatagg-aaaaaaaaagcacactgccaggtgtcat 591
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 588 taaggctaatgctcctacaagcacctataggaaaaaaaaaagcacactgccaggtgtcat 529
Query: 592 agaccctttccagttg 607
||||||||||||||||
Sbjct: 528 agaccctttccagttg 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1008
Length adjustment: 10
Effective length of query: 597
Effective length of database: 998
Effective search space: 595806
Effective search space used: 595806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_o02.g1 MSMg01no302_o02.g1 CHROMAT_FILE:
MSMg01no302_o02.g1 PHD_FILE: MSMg01no302_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:37 2005
(648 letters)
>mm_chrX_79523873_79524920
Length = 1048
Score = 1230 bits (636), Expect = 0.0
Identities = 645/648 (99%)
Strand = Plus / Plus
Query: 1 actgtagaagtgctcagaacagcctagtgttattgtgaaagacttagaccagcactggta 60
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 201 actgtagaagtgctcagaacagcctagtgttattgggaaagacttagagcagcactggta 260
Query: 61 ttctaggacaaagagaatcactagaatttggatgatctctaaaataagtttatatttcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctaggacaaagagaatcactagaatttggatgatctctaaaataagtttatatttcct 320
Query: 121 tatgctaacaaacagggcattatcaagacccaataaaataattataaacacttaataatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgctaacaaacagggcattatcaagacccaataaaataattataaacacttaataatt 380
Query: 181 gtcagctactaatcacattattagggtcttgtttctacaattatacatataaaattgtac 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcagctactaatcactttattagggtcttgtttctacaattatacatataaaattgtac 440
Query: 241 taagcataaagttagaatactttcaaagttattgtatgtaatttttaaaaattgtattat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagcataaagttagaatactttcaaagttattgtatgtaatttttaaaaattgtattat 500
Query: 301 tatgccaatctaattaatgcagttgcttaatttcactatattctgcagatgctggataaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgccaatctaattaatgcagttgcttaatttcactatattctgcagatgctggataaa 560
Query: 361 aattactgagtgtgtgtgtgtgctttgtaattgtactattatttctggacatctggtaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattactgagtgtgtgtgtgtgctttgtaattgtactattatttctggacatctggtaca 620
Query: 421 ttctaaataaaaaactctatgagggtttcaattaaaaaattgaaagtcaaaaaggcatta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctaaataaaaaactctatgagggtttcaattaaaaaattgaaagtcaaaaaggcatta 680
Query: 481 tttttgtgggacctttagctatcaaatacatttagttatcttctttctacattattagtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttttgtgggacctttagctatcaaatacatttagttatcttctttctacattattagtt 740
Query: 541 cttcaggttcatattactaggaactcatatcacaaaataatttatattgcctttcaaatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttcaggttcatattactaggaactcatatcacaaaataatttatattgcctttcaaatg 800
Query: 601 aatacatatttttacataaaataattttgcaagagttcactactaaat 648
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aatacatatttttacataaaataattttgcaagagttcactactaaat 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
