BAC Information

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BAC

Clone NameMSMg01-304M08
ChromosomeX (Build37)
Map Location 162,456,969 - 162,457,609
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627045, Glra2, LOC100040753
Downstream geneGemin8, Gpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304M08.T7 (MSMg01no304_m08.b1)MSMg01-304M08.TJ (MSMg01no304_m08.g1)
ACCAG429950AG429951
length1,3801,388
length of high quality
(start - end)
672 (90 - 761)646 (132 - 777)
definitionCHROMAT_FILE: MSMg01no304_m08.b1 PHD_FILE: MSMg01no304_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:51 2005CHROMAT_FILE: MSMg01no304_m08.g1 PHD_FILE: MSMg01no304_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCGGTTTTNNNNNNCCATTGGGCGCTAAGACTCCTATGGGAGAGGAT
CCGCGGAATTCTTTGTTCAGCTCTGAGCCCTTTATTTTATGGGGTTATTT
GATTTTCTGGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATATTAG
TCCCCTATCCAATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTG
GCCTTTTTGCCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAAT
TTTATGAGGTCCTATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGC
TGTTCTACTCGGGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCC
CTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCC
TTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAAAAATGGATCAGT
TCACATTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGA
AAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATC
AAGTTACCATAGGTGTGTGGATTCATCTCTGGGTCTTCAATTCTGTTCCA
TTGGTCTACTTGTCTGTCACTATACTAGTACCATGCAGGTTTGATCACAA
TTGCTCTGTAGTAGAGTTTTAGGTCCTGCATGGTGATTCCACCAGAGGTT
CTTTTATCCTTGAGAAGAGTTTTTGCTATTCTCGGTTTTTTGTTACTCCA
GATGAATCTGCCGATTGCCCTTTCTAATTCGTTGAAGAATTGAGTTGGAA
TTTTTGATGGGATTGCATTGAATCTGAATATTGCTTTTTGGCAAATAAAC
TTTTTTTAAATGGTGATTCTTGTCTATCTCTGAAGATTGTGAAATCTTCC
CTCCTTCTCAAAACTTCTTTTTATTTTTTTCTTTATAAACTCGTAAGTCC
TCTTATTCTCAATATTTTCTTCCTTTATATTTTATNACAAATAGAGATTT
TTTCTTTTTTTCTCCTTTTTAAATAGTATTGCTATTATTTTTATTTTAAT
TCTTTTAACTTATACTTTTATACACTGTCTAATTTTTATTTTTTCTTCCT
TTATCTCTTTTGATATGTTCATTTATTGCTATCTATAATTAATTCGTTTG
ATTTTGAATCTTTTAATTTATATTTTAAATCACTATATCTCTTGTAATAT
TTACCTTACTTATCTTCATTTATTTCTCTTTCATTTTCAATTTTCATCNT
ACCTTCTTTTTATTTCTGCCCAGCACCCTTAATTATATTAGTTTTCTAAT
TTGTATTCGACCTTCNNNTTTNCNTNNANTNNTTANTAAAANNNNNNNNN
TTATTAAGTTCCTTGATATTACCTCTTCTG
NNNNCAATTCTTTNNNNNATCATGGAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAAATATCATTCCAGTA
AATGTAGTGATTTTTTTCTCCATAGACTCATGAGAGCATGAATTCTGATG
TTTTCAGAACACCATTCATTTCTGTTTGACATTGACAATTAACAAGTAGA
CCTTAGCTGCTTATCAAATCAGAGCTTCACTTAAATTTCTCCTGACTAGA
AATTAAAAAGTTGTTTCCAAGGTAACTGACAACCAGCTATTGCCCTCCAG
GGTATCTTAAGTTTGGAATTTAAAATGGGATCCCCATCCCTCATCTCTCT
ATATATTTCTTTTTCTCTCCCCTCTCCCTTGTTGTTGGTTATAATTTTTT
TTGAAGACATTCTCCTAGGCTGCAGTAAAAGAATGTTGAGTACCCTAACA
TTCTGAGATTTCAAAATAAAGTATTAATCGAGCATTATAGATTATGATAG
CTGGGATGCATGGGAAAGGAGATCACATGACCAGATGGAAAAGCTATAGA
GAGATTCAGGGGGCTTAAGTTTTCTCTTAAAACAGCTTGTTCTCAAAAGA
ACTTAACAGGGTCTCATGAGAAGTACTTTAATCCCTCCCAAGAGGAGCCA
ATTTAATGACCCTAAACCTAAATACTTCCTACTCAACTCCATTTTTTAAA
GGTTTCTCATCACTTCCCAAATCATGACTCTAAAGACCAGGTCTCAAACT
CATGAATATTTAGGGGACAAATCACATTGAAACCCAGCAAGCACTGATTC
ATTTCATTGCCCAATTATATTGCCCAAACACCTCCTGCTGGATCCTGCTG
GACTCTACTAAAAATCTCATACACACTTGAAAAAAACATTCCCCCACATG
GACTGTTGAAGGGGATATTTTACCCCAAAAAAATTATGCTTTTTCTCTCC
CCTTTTCAGGGGATAAAAAAAAAATTCATTCCCGAAATTTGTTAAACCAA
TATTTCGATAAAATGAATACAAGGGTTATGTGGAAACATTTTGTTATGCA
AAAAAACAGAACCCCAAAGTTTTTTTTCTTGTTGCGGGTNAAGGGAAGAA
AAAAAATTTTTTTTCTTTCCTTTTTCTGCCTCACATCCACTGATTGTTCT
TTATTGTTAGTTCATTATTACATTACTTCACTGTTGTTTATACACTCCTA
TCTCCATACTTATCTTTCACTTGTTATTTTTGTCTTCCTCTATGTNNNCT
TCAATATTTNACGCTTTCCTTTACATANNACTCGTTTAAACCCATGTGTA
TTCTTCATATACTCCCGTCAATNNGNTTTTTAATNNNNTNTNTNNNATCA
AACNCCCACCNNNNNACGCACAGTTAGTATATCAGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_m08.g1 MSMg01no304_m08.g1 CHROMAT_FILE:
MSMg01no304_m08.g1 PHD_FILE: MSMg01no304_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:51 2005
         (646 letters)



>mm_chrX_162456765_162457809
          Length = 1045

 Score = 1203 bits (622), Expect = 0.0
 Identities = 637/642 (99%), Gaps = 1/642 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gcatgaattctgatgttttcagaacaccattcatttctgtttgacattgacaattaacaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 gcatgaattctgatgttttcagaacaccattcatttctgtttgacattgacaattaacaa 786

                                                                       
Query: 65  gtagaccttagctgcttatcaaatcagagcttcacttaaatttctcctgactagaaatta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gtagaccttagctgcttatcaaatcagagcttcacttaaatttctcctgactagaaatta 726

                                                                       
Query: 125 aaaagttgtttccaaggtaactgacaaccagctattgccctccagggtatcttaagtttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 aaaagttgtttccaaggtaactgacaaccagctattgccctccagggtatcttaagtttg 666

                                                                       
Query: 185 gaatttaaaatgggatccccatccctcatctctctatatatttctttttctctcccctct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gaatttaaaatgggatccccatccctcatctctctatatatttctttttctctcccctct 606

                                                                       
Query: 245 cccttgttgttggttataattttttttgaagacattctcctaggctgcagtaaaagaatg 304
           ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 605 cccttgttgttggttataa-tttttttgaagacattctccaaggctgcagtaaaagaatg 547

                                                                       
Query: 305 ttgagtaccctaacattctgagatttcaaaataaagtattaatcgagcattatagattat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttgagtaccctaacattctgagatttcaaaataaagtattaatcgagcattatagattat 487

                                                                       
Query: 365 gatagctgggatgcatgggaaaggagatcacatgaccagatggaaaagctatagagagat 424
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 486 gatagctgggatgcataggaaaggagatcacatgaccagatggaaaagctatagggagat 427

                                                                       
Query: 425 tcagggggcttaagttttctcttaaaacagcttgttctcaaaagaacttaacagggtctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcagggggcttaagttttctcttaaaacagcttgttctcaaaagaacttaacagggtctc 367

                                                                       
Query: 485 atgagaagtactttaatccctcccaagaggagccaatttaatgaccctaaacctaaatac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atgagaagtactttaatccctcccaagaggagccaatttaatgaccctaaacctaaatac 307

                                                                       
Query: 545 ttcctactcaactccattttttaaaggtttctcatcacttcccaaatcatgactctaaag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttcctactcaactccattttttaaaggtttctcatcacttcccaaatcatgactctaaag 247

                                                     
Query: 605 accaggtctcaaactcatgaatatttaggggacaaatcacat 646
           |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 246 accaggtctccaactcatgaatatttaggggacaaatcacat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1045
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1035
Effective search space:   658260
Effective search space used:   658260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)