BAC Information

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BAC

Clone NameMSMg01-304N06
ChromosomeX (Build37)
Map Location 122,537,821 - 122,538,568
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434843, EG665463, EG665522, LOC100038969, LOC100038978, EG665579, EG665611
Downstream geneEG626048, LOC100040410, LOC100039903, LOC665679, 4932411N23Rik, Gm381
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304N06.T7 (MSMg01no304_n06.b1)MSMg01-304N06.TJ (MSMg01no304_n06.g1)
ACCAG429991AG429992
length1,3071,296
length of high quality
(start - end)		744 (130 - 873)615 (125 - 739)
definitionCHROMAT_FILE: MSMg01no304_n06.b1 PHD_FILE: MSMg01no304_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:59 2005CHROMAT_FILE: MSMg01no304_n06.g1 PHD_FILE: MSMg01no304_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:59 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNCCCGGTCTNNNNNNNGTCATTGGGCGCTAAGACTCCTATGGGAGAGGA
TCCGCGGAATTCCTAAAACTCTGGGAACTTTTAAACCTCTGAGGAATTTT
TTTTCTTGATTTGATTACTTTAAATACGAAGACCAACCCCAAATGTAGAT
CGTTTGTTCTGTTGTAGAAACAACTCTACAATATAAATTTCATTGATGTT
AGTTTTTTAATAAAAGTGTGTAGCTAGGACTTAATTTTAGTAGTTTCAAT
CAAGATAGCTTTTATGATCTTACACTGTTTCTGTCTTTTATTACAGTGTT
TTCTGAACACTGAGGTAGAGATTTGATGGTGACCTCCCTTGTAGGACTGA
ATGTTAGAAGGTCCCTCAGGCTTTGCATATTATCTGGCTGCAAGTCTCTG
TATTTGTTTCATCTGCTGCATGAGGATACTTCTGTGATGGTGAATGAGCA
AGATACAGATCTGTGAGTATAGCAAAATGTCAACAGGAGTCATTTAACTG
CTATAATCCTTTAGTAGAATAGTAGTATTTGGTCTTTCTCTAGATCCCTG
GCATTTCTAGTTTCAGGTTCTTGGCCATTCAAGCATTGTTGAGTATGGAT
TCCACTTAATGATATCTGTGATTGTATATGCTTGGCACAGGGAATGGCAC
TATTAGGAGATGTGGTCTTGGAGTAGGTGTGTCACTATAGGTGTGGGATT
AATACCTTCATCTTAGCTGTGAGGAAGTCAGTCTTCCACTAGCAGCCTTA
CAGATGAAGATGTAGAACTCTCAGCTGTGCCAACTCTATGCCTGCTTGGA
TGCTGCCATGTCCCACCTTGATGATAATGGACTGAACATCTGAACCTGTA
AGCTAGCTCCAATTATATGTTGTCCTTTATAAGGCTTGCCTTGGTCATAG
TGCCTGTTCACTGCAGTAAAACCCTAACTAAGACAGCATCTTTTANAGCC
TCTTTGTTCTAGAAAGATAACTTTGGGGAATTTGGTTGNTTGGCTTCCTA
CCAAACAGAACCTTTTGGAAAAATAATTTTTTTGGGGTGGGGTTTTAATA
AAATGAAAAATGTAAGGGGGGTTTTTTCTTCTTATATATTTATTCTAGGT
ATCAGGGAGCTTTATCATACATATCTATCTCCTCCTCCCTTTACACCCTC
TCGTTTTTTTCAATGTTTTCATATTATTTCATATTCTCTTCCTCTGTCAT
TATTCTCTCCTCTCTTTTCTTCTCTCTTTCCATCCAAGTATTCAATTATC
TTTTTCTATTCTATTCCTTTCTCTTTTTCCTACTCTCTATATATTTATTC
TGTATCT

NCCGGTTTNNNNNNNGCGCATGGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAGACTCCTTTGGTCCCTGG
AATGAAGTTAAAGGTCCCTTTGTAGGTTTAGAGAGATCTAAAGGCTCTTC
TGTGGAAAGGGAAGGATCCAAAAGGCTTAGGGAAGAAAATGAGGAACTAA
GTTGGGCAGAAATTGCAAGTTCCAGAGGTGAGTCATTGGATATTACATAT
CCTGGGGTAACTGTTGAAAATTTTTGTGCACCTGATGCAAATGATGAATA
TCCTAGAGTCCCCTGTGGAGATGGCAAAGGTTCTACAGATCCTTGTGTAG
TTGCTGAAATCCTCAGAGATCCCTGGTCAGATCTCAAAGTCCTTGCTGTA
TTTTGAGCAGGGTGCATATATCCCTGACACACTGGGAAAGATGGTGAGTC
TGCTACTGTGTAGTGTGTAGATGTGGACTGAGTTCCTATAACTTGTGTAT
GTAAAGAAGGACTTGAAAACCTTTTGGAAGATGTAGAATGTTGGCAAGAC
CTTTGTGGACATGGGGACAGATGTACAATACCCTGTGCAGAGAGACCGGG
ACTCACACCTCCATGAGCAGGATCAGAAGATGCTGGAGTCCCTTGTTCTG
AGGAGGAAAGACCCAGAGGATTATGAGAACATTCAGAACATTGTGATGCA
TTCATCATTGCCTGGGCTGAGATAGAAAGTTTCAGAGGCCCCTGGGCAGA
TTGCAAAGGTGCTAGATACCCTTGGGCAAATGGGAAAGTCTCTGCACCTC
CTTGGGTAGAAACGGAATGTCTACCAAGTGTAGGAGGTGATGGTGGCAAA
GTACCTAGAGTCGCCGAAGTAGACTGAGAAGATGCTACAGCCTGCCTCAC
TTGTGGAAAAAGGCCTAAAGCACTCTGTGACTCTTCATATTGTGCCAATA
TCCCTGGGGCATCTGGTGGATTTTCCCGAATTCTGTGGTGGGGGAAAAAA
AAACTTTGCTGGGGCAAAGTTCCTCCTTCTGGCCCTAAAAAAACCCTTGG
CTTTTTGAAAAAAAGAAAAAGTTTCTAAACACCCGGGATAGGGAAAAAGT
GGTTCTGAAAATCCCTAAAGGGGGGGGGAGGTCCCTCTTTTAGGGGAAAG
AAAAAAGGTTCTTTTAATTTCGCGCCACAAGAAAATAAAGTTTTCTTTTC
CCACCCCCCCCCCTTTTAAGTAGGTGAGTTTAAATACTTACCCCTCACCA
CCCTCCGCTATCGTGGTTACTACATAAACATTTTATTTCTCTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_n06.b1 MSMg01no304_n06.b1 CHROMAT_FILE:
MSMg01no304_n06.b1 PHD_FILE: MSMg01no304_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:59 2005
         (744 letters)



>mm_chrX_122537621_122538763
          Length = 1143

 Score = 1205 bits (623), Expect = 0.0
 Identities = 716/749 (95%), Gaps = 6/749 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaccaaccccaaatgtagatcgtttgttctgttgtagaaacaactctacaatataaatt 60
           ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 201 agaccaaccccaaatgtagatcgtttgttttgttatagaaacaactctacaatataaatt 260

                                                                       
Query: 61  tcattgatgttagttttttaataaaagtgtgtagctaggacttaattttagtagtttcaa 120
           ||||||||| |||||||||||||||||||||||||||||||| |||| ||||| ||||||
Sbjct: 261 tcattgatgctagttttttaataaaagtgtgtagctaggactaaattctagta-tttcaa 319

                                                                       
Query: 121 tcaagatagcttttatgatcttacactgtttctgtcttttattacagtgttttctgaaca 180
           ||||||| | |||||||||||||||||||||||||||||||||||||||||  |||| ||
Sbjct: 320 tcaagatcgtttttatgatcttacactgtttctgtcttttattacagtgttccctgagca 379

                                                                       
Query: 181 ctgaggtagagatttgatggtgacctcccttgtaggactgaatgttagaaggtccctcag 240
           ||||||  |||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 380 ctgagggggagatttgatggtgacctcctttgtgggactgaatgttagaaggtccctcag 439

                                                                       
Query: 241 gctttgcatattatctggctgcaagtctctgtatttgtttc-atctgctgcatgaggata 299
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 440 gctttgcatattatctggctgcaagtctctgtatttgtttccatctgctgcatgaggata 499

                                                                       
Query: 300 cttctgtgatggtgaatgagcaagatacagatctgtgagtatagcaaaatgtcaacagga 359
           ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 500 cttctgtgatgatgaatgagcaagatacagatctatgagtatagcaaaatgtcaacagga 559

                                                                       
Query: 360 gtcatttaactgctataatcctttagtagaatagtagtatttggtctttctctagatccc 419
           ||||||||  ||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 560 gtcatttatttgctatactcctttagtagaatagtagtatttgttctttctctagatccc 619

                                                                       
Query: 420 tggcatttctagtttcaggttcttggccattcaagcattgttgagtatggattccactta 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 620 tggcatttctagtttcaggttcttggccattcaagcattgttgagtatggattccactca 679

                                                                       
Query: 480 atgatatctgtgattgt----atatgcttggcacagggaatggcactattaggagatgtg 535
           |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atgatatctgtgattgtttgtatatgcttggcacagggaatggcactattaggagatgtg 739

                                                                       
Query: 536 gtcttggagtaggtgtgtcactataggtgtgggattaataccttcatcttagctgtgagg 595
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 740 gtcttggagtaggtgtgtcactataggtgtgggcttaataccttcatcttagctgtgagg 799

                                                                       
Query: 596 aagtcagtcttccactagcagccttacagatgaagatgtagaactctcagctgtgccaac 655
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 800 aagtcagtcttccactagcagccttacagatgaagatgtagaaatctcagctgtgccaaa 859

                                                                       
Query: 656 tctatgcctgcttggatgctgccatgtcccaccttgatgataatggactgaacatctgaa 715
           || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tccatgcctgcttgaatgctgccatgtcccaccttgatgataatggactgaacatctgaa 919

                                        
Query: 716 cctgtaagctagctccaattatatgttgt 744
           ||||||||||||||||||||| |||||||
Sbjct: 920 cctgtaagctagctccaattaaatgttgt 948


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 744
Length of database: 1143
Length adjustment: 10
Effective length of query: 734
Effective length of database: 1133
Effective search space:   831622
Effective search space used:   831622
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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