BAC Information

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BAC

Clone NameMSMg01-305B16
ChromosomeX (Build37)
Map Location 73,354,151 - 73,354,536
singlet/doubletsinglet
Overlap genenone
Upstream geneDkc1, Mpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218, Fundc2, Mtcp1, Brcc3, LOC667496, Vbp1, Rab39b, EG635243, Pls3, LOC635275, EG635295, LOC667537
Downstream geneLOC385472, LOC100041147, EG238829, Magea7, 4930428D18Rik, EG544974, 4930468A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305B16.T7 (MSMg01no305_b16.b1)MSMg01-305B16.TJ (MSMg01no305_b16.g1)
ACCAG430181AG430182
length1,3301,297
length of high quality
(start - end)
387 (479 - 865)783 (90 - 872)
definitionCHROMAT_FILE: MSMg01no305_b16.b1 PHD_FILE: MSMg01no305_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:37 2005CHROMAT_FILE: MSMg01no305_b16.g1 PHD_FILE: MSMg01no305_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCATTTNNNNNGGGCATTGGGCGCATAGACTCCTATGGGAGAGGATC
CGCGGAATTCAAATATAAAATTTTAACAATTAAGGACAGATAACTGCCAG
AGTTTCCCTAGTTTGCCTTTTTATACAGCTTGTGATTGGGGAATCCAGCC
TTCCCAGTTTCCATTCCTTTTATTTTTAATTTTTTTTATTGCTTATTTTA
TTTACATTTCAAATGTTACCCCTTCCCAGTTACCCCTCTGAAAACCCCCT
AGCCACTTTCAAGTCCATGGCATTTATTCTGTGTTTTGCTTGCTGAGAAT
CCCTCTCATGCCCTCAAACAACTTCCAGTACCTATCTTCAAGTGCTCCTC
ATACCCACTTAATCTTGTAAATTCCTCAGTGCCTTTCCCAGGTATAGGTC
TATGTAGATTAAATGAGAGATGGATGAGAAGCCAAGTGACACATGCTTGT
GATTTCCAGATTTTTTACACCGCCCCAAGAGGACAGTAATTTCAAGGCCG
AACTGGACTATATAGCAAGACTCTGTCACTTTAAAAAAAAGAGAGAGAAA
GAAATGGAAGAGAAACAGATAAAAAGTATTTTCAACTTACTTCTAAATAT
TTAAGTTTTCTTAGACTTATATTTTCATAAATTATTCCTAAAATAAATGC
CAACTTTACAGCTAAAACATATGCACTTAGTTGGAGCCAACAGACCATTG
CCATAGATTTTTTTCTGGAAAAAAAAGGAAATTTAATTTTGAAATTAAAT
CATTTATATGGTATCAATGTTCCAAATGCTGACTGGCTGAGTTATAGTAT
CTATAAAGTACTTTCCAGCTCTAAGAGTCCCTGATATTAATGTAGAATAT
GAAATATGGACTTGGCCAAGATAAATTTAAAGTGCCAAAAAATCCAACAA
GGGCCTATGAAAAGGGTCATGGTGTGTGGTCTGTCACTTTGNTGACACAA
TGTGCCAGCAGGGAGCGAGGGACAACCAGCCTCCTTGTTGCACATGGGCA
GTTTTCATTTCCTGCTCCGTTTTCCGAAAAGAGAAGACTCCTTGAGTTAG
CTTCCCCTGAGTCCCGGGGGGAAAATTGCCGCCTTCATGGATGGCATTTC
CTCCAAGAAAAAAGTTTCCTTCTGTTTTGGGACAAAAAAAACCCTTTAAA
ACAAATTTTGTTGGAAAATTTTTTTCCTTTCTTTTTTTTTTTTCCCGGGG
GGGCTGGCCTTATCCCCTTGGAAAGAGGAGGGGATTTTTGGGCCTGTTTT
CAAAGATTCTAAGCGGGTTAAAAAATTTTTTTTTNTAAAACCAACCCAAA
AATATNGTTCCCCCTTCCGTATCTTTCTTT
NCCGATTCTNNNNNNTTCGCATGGAGGCTGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTAGGGAGCCACGAATAC
ACAGAAAAAAAAAAAAACTCCCCTGACAAATTAAAGAAGTTGAAGAAATC
CAGGAAAAAAAATAAACATATAGTTCAAGGTGAGGGTATAACTATTCAAG
ACCTGAAAATGGAAATAGAATCAACAAGAGAAACCAAACCTGAAAGAATT
TTGGAAATGAAAATTTTAGTTATTTGAATGGGAACTGCAGAGGCAGTATT
CACTAAGAGGACAGAAAGGTTGGAAGAAAGATTCTTTATACACACACACG
CACACACAAATGATTAATATACAAATTCCTGACACAGAACATCCAGGAAA
TCTAAGGTGTTTATCATTTGTAGGAGTTCTCTTGTTGAATTTTGGGGGTC
ACATATTATACTAGCATATCATTTGCAATTAGTGAAACCTTGACTTCTTC
TTTGCCAATTTGTATCCCCTTGATCACCTTTTGTTCTCCCATTGCTTCAG
CTAGAACTTCAAGTGCTATACTGAATAGATAGGGAAGAGTGAGCAACCTT
GATTTTAGTGGGATTGCTTCAAGTATCTCTCCATTTAATTTGATATTGGC
TGTTGGTTTGCTGTATACTGCTTTTATTATGTTTAGGTATTGGCCTTGAA
TTCCTGATCTCTCCAATACTTCTAACATGAAGGAGTGTTGTATTTTGTCA
AATGCTTTTCCAGCATATGAGTAGAAGAGTATGCAATTTTTTTTCTTTGA
GATTTTTATATAGTGGATTATGCTAATGGATTTTTGTATGTTGAATGAAC
CTTGTATCCCTGGGATGCAGCCTACATGATAATGGTCGATGATAGTTTTG
ATATGTTCTTGGATTCTGTTTGTGAGAAATTTAATGGAAATTTTAGCATC
CATATTTCTAAATGAAATTGGGCTGAAAATTTGAATTTTAGTCTGAATTT
CCGGTTTTTTTTTAAAAAAAAGGGATTAAACCTGCCCGGGATTGGGTAAA
AAAAAACCCGGTTGGTTATTGGGTTTAAATTTAAAACCAAAAAAAAACCC
GCCCCCCTTCAAAAATTTATTTTTTCTAGAAACACCAAAATTCCCTCTGT
AGAAAAAAAAACCTTTTTAAATGGGGGAGGCCACAGGGCACCTGTTGTTA
AAAAAAAAAAAAAAACAAATTTTTTTTCTTTTAGACTTCTGTCCGGGGAA
AGGGACCCCTTATAACCACATCTGTATTTTAATAAAAAAATAATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_b16.b1 MSMg01no305_b16.b1 CHROMAT_FILE:
MSMg01no305_b16.b1 PHD_FILE: MSMg01no305_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:37 2005
         (387 letters)



>mm_chrX_73353950_73354736
          Length = 787

 Score =  714 bits (369), Expect = 0.0
 Identities = 383/389 (98%), Gaps = 5/389 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggacagtaatttcaaggccgaa--ctggactatatagcaagactctgtcactttaaaa 58
           |||||||||||||||||||||  |  ||||||||||||||||||||||||||||||||||
Sbjct: 202 gaggacagtaatttcaaggcc--agcctggactatatagcaagactctgtcactttaaaa 259

                                                                       
Query: 59  aaaagagagagaaagaaatggaagagaaacagataaaaagtattttcaacttacttctaa 118
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaa-gagagagaaagaaatggaagagaaacagataaaaagtattttcaacttacttctaa 318

                                                                       
Query: 119 atatttaagttttcttagacttatattttcataaattattcctaaaataaatgccaactt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atatttaagttttcttagacttatattttcataaattattcctaaaataaatgccaactt 378

                                                                       
Query: 179 tacagctaaaacatatgcacttagttggagccaacagaccattgccatagatttttttct 238
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tacagctaagacatatgcacttagttggagccaacagaccattgccatagatttttttct 438

                                                                       
Query: 239 ggaaaaaaaaggaaatttaattttgaaattaaatcatttatatggtatcaatgttccaaa 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggaaaaaaaaggaaatttaattttgaaattaaatcatttatatggtatcaatgttccaaa 498

                                                                       
Query: 299 tgctgactggctgagttatagtatctataaagtactttccagctctaagagtccctgata 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgctgactggctgagttatagtatctataaagtactttccagctctaagagtccctgata 558

                                        
Query: 359 ttaatgtagaatatgaaatatggacttgg 387
           |||||||||||||||||||||||||||||
Sbjct: 559 ttaatgtagaatatgaaatatggacttgg 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)