BAC Information

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BAC

Clone NameMSMg01-311A13
ChromosomeX (Build37)
Map Location 165,020,525 - 165,020,797
singlet/doubletsinglet
Overlap genenone
Upstream geneFrmpd4, EG667822, EG637566
Downstream geneMsl31, Arhgap6, Amelx, Hccs, LOC100040950, BC022960
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311A13.T7 (MSMg01no311_a13.b1)MSMg01-311A13.TJ (MSMg01no311_a13.g1)
ACCAG433652AG433653
length729753
length of high quality
(start - end)
298 (127 - 424)276 (77 - 352)
definitionCHROMAT_FILE: MSMg01no311_a13.b1 PHD_FILE: MSMg01no311_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:46 2005CHROMAT_FILE: MSMg01no311_a13.g1 PHD_FILE: MSMg01no311_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACATTGTTTCCCTGACCTGTGGAGTGAGAGCTATTATGGTTGG
AAAAGCTAAATGAACATATTTACCAGTTGCCTCTGCCAAGGAAAATAATG
ACTCAAAACCAGTATCACATCCCTAGAGGAATGGCAGAAATTAGTAACAC
CATACTTGAAAGATGCAGGGTTGGTGGTTTCTAACACATCTCCCCTTAAC
TCCCATATCTGGCTATTGAAGAAGACAGACGGATCATGTAGAATGACAAT
TGACTATCAAAAACTCAATTAGGTAGTGACTATGATTGCAGCTGCTGTAC
AAAATGTAGTGTTTTTACTTGATCAAATTAACATACAGTTATGAAGCTAT
TGATCTAGCAAATACCCCCCCCCCCGCCAGCTGTCCATAAGGACCACCAG
AAGCAATTGGCTTTCAATTGACAAGGCCAGGAGTATATCCTTTCAATTTT
ACCTCAAGGATACAACTCTCCAGCCCTATGTCATAATTTAGATGGGATTC
CAATCCTGTCTCTTCCACAAAATATCATCCTGGTGTACTATATTGATCGA
ATTATACTGATTGGACTAAGTGAGCGAGAGGTAGCAACCATTTTGAACTC
ATTGGTGACACATATATGCAGTAGAGGATAAGAAAATAATCTAACCCAAA
ACTGAGGGCCTTCAGCCTCAGGCAAATTC
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCTAATATGCTCCATGAACCAA
GCTGCTGGGGAAAAGCTTGATAGACACATCATGGCTGGGTGCGATCTGGG
CTGTGTTAAGAGTGAGCAAACCCCATAAAACAGAAGATAGTATGTTGATC
ATTCGACAGTGGGTGTGCCACACCCGAAGACGAGTCTATGGTTATCACAA
AGTTGGAGGTTAGGGAAGGTGGAGGAGCATCTGGGATGAGTTAAAAGGAG
GAGTTGGGGGTGAATACAATCGAAATATTTAGTGTGAAATTCTGAAAGAA
TTAAGACATATATTTTTTTTTATTTCTCCCCCCCCCCCCTAAGNAAGGTA
TNATAAAAATATACCCTATTTCCCCCCCCAAAAAAAAAAAAAAAGAGGTG
GGGGGGGTAGGATCCCCTGATTTAGGGCTTTCATATGCCACGCTAAGGGC
TTTCCAAGCGCTTGTCACGACATTGGACCTTTGGCACTGCTCTTGTGCAC
TTCTTCCCGTGAGCCATATTGACCACTTTACCATCGCTTATCGGATCGTA
CTCTCTTTCCTCTCTTATTTTCCTGTTCTACTTCCCCCCCTATTATCTCC
CCCCCTCCCGTCTTCATCCCATCCGCCTTAATATTCCCATTTCCCCTTCC
CCTCTCTTTTTACCCACCCTCCTATCCCCTCCCTCCTCTCCCAAACATCC
CTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_a13.g1 MSMg01no311_a13.g1 CHROMAT_FILE:
MSMg01no311_a13.g1 PHD_FILE: MSMg01no311_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:46 2005
         (276 letters)



>mm_chrX_165020325_165020997
          Length = 673

 Score =  464 bits (240), Expect = e-135
 Identities = 266/276 (96%), Gaps = 3/276 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctaatatgctccatgaaccaagctgctggggaaaagcttgatagacacatcatggct 60
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 201 attctaatatgctccatgaaccaagctgctggggaaaagcttgaaagacaaatcatggct 260

                                                                       
Query: 61  gggtgcgatctgggctgtgttaagagtgagcaaaccccataaaacagaagatagtatgtt 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtgcgatctgggctgtggtaagagtgagcaaaccccataaaacagaagatagtatgtt 320

                                                                       
Query: 121 gatcattcgacagtgggtgtgccacacccgaagacgagtctatggttatcacaaagttgg 180
           |||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 321 gatcattcgacagtaggtgtgccacacccgaagacaagtccatggttatcacaaagttgg 380

                                                                       
Query: 181 aggttagggaaggtggaggagcatctgggatgagttaaaaggaggagttgggggtgaata 240
           ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 381 aggttagggaaggtggaggagcatctgggatgagttaaaaggag---ttgggggtgaata 437

                                               
Query: 241 caatcgaaatatttagtgtgaaattctgaaagaatt 276
           |||||||||||| |||||||||||||||||||||||
Sbjct: 438 caatcgaaatatatagtgtgaaattctgaaagaatt 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 673
Length adjustment: 9
Effective length of query: 267
Effective length of database: 664
Effective search space:   177288
Effective search space used:   177288
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)