BAC Information

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BAC

Clone NameMSMg01-311P15
ChromosomeX (Build37)
Map Location 134,674,170 - 134,674,454
singlet/doubletsinglet
Overlap geneIl1rapl2
Upstream geneEG666303
Downstream gene1700025D03Rik, Nrk, Serpina7, 4930513O06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311P15.T7 (MSMg01no311_p15.b1)MSMg01-311P15.TJ (MSMg01no311_p15.g1)
ACCAG434323AG434324
length718722
length of high quality
(start - end)		315 (46 - 360)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no311_p15.b1 PHD_FILE: MSMg01no311_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:57 2005CHROMAT_FILE: MSMg01no311_p15.g1 PHD_FILE: MSMg01no311_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCTTCTTCCAGCAGTTGATATTTGTTTATAGTTCTTTGTCTAAG
GGTGGGACCCCATAAAGTTTCTTTCTCTTTGACATTAACATTTCCATTTT
TGTTGCAATTCTTCTGGTCTTGTTTAGGTGAGTATTTCTAGGAGGGACTG
TTTCATGGATGACTTCTTCAGATTCTGGCTCTTAGGATTTTTTCCATCCC
GTTTACTGCAGTATTGCCTAAGCCATAGGTACAGGAGCAATAAGGTAGAT
ATACCTACTGGAACTGGGCTCCCTAAAATACATTGATCCCAGTAACACAC
ATGAAACATAATGTTTACTGGCATACCCCACATGTATATAGGTGCAGAAA
GTGACACTCACATGCCGCCCGCCAAACAACAGAAATCTAATTGCGCTTAA
GGGCCACTTAATCACAGGGAAATCATTCCTAGTGCTGGAAATCTAGTAAG
CTTTCTGGTTCTAATAANACTATGAACCTTAGAAAATAATCTACTGCTGC
CATTGAAATAGACCAGCATAAATCCTTACCACACTCTAAATCTTATCCTT
TTAGCTATTATCCTTCATTAAAGAAGCTCNTTTCACAGGTGATAGAGATC
AGCACAGAAAACCTCAACTTATTAGATTTTATTAGGTGTATATATTTATA
ATTGCCATATCCTATTTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGGAGACAGAAACATTTACGGT
ATTCTTTTATTGGGTAAAAGAAAGGCATTGACCTTTCTGCCCTCTAATTC
TGTAGGGTTAAAATATCCCTAGTCATTAAAGAAAATTGTCTCCCCACCCT
CTCATCAAGGTAATTAAAGCAGATCATTTTTGGTCTGAAACATCTTATAA
TGAAGTAATTGGCTTGGTTTTTTTTTCTCCTCCTGTCAAAAGTCAACAAT
AAATTAACAGTTGTATTGTCATCTATCCTATTTCAAAGTCATAATGCTAT
TCTCTTAGGAAATTANGTTGNTTATCCCCCCCCCCCGCTAACTACCAAGT
CAGTTTGTTGTTACTTCCCCCCCCCAACACAAAAAAAAAATTCTGGGAGG
GCTGTACTCATAGCATTTCTGATGGCAATTATAATGTCCTAACTTGCATT
TGTTATATTCATAGCAGCAATCAGTTAACAACATACACAGGAACTTATAT
GAAAAGCTACTATTGGCTTTTATAAATGATGTTATAAATGTGTCATTTAA
CATATTTTTGAAAGACCTATGTTTTATTCTTATTTTTTTTTTTCTAGCAA
TTGATTCGAATTCCGGAAATCCTGATTTGGAGCAAAGGGAGGAGAGAGGC
AATCTTTTAAAGAACGAATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_p15.g1 MSMg01no311_p15.g1 CHROMAT_FILE:
MSMg01no311_p15.g1 PHD_FILE: MSMg01no311_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:57 2005
         (287 letters)



>mm_chrX_134673970_134674654
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 285/287 (99%), Gaps = 2/287 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggagacagaaacatttacggtattcttttattgggtaaaagaaaggcattgaccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggagacagaaacatttacggtattcttttattgggtaaaagaaaggcattgaccttt 260

                                                                       
Query: 61  ctgccctctaattctgtagggttaaaatatccctagtcattaaagaaaattgtctcccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgccctctaattctgtagggttaaaatatccctagtcattaaagaaaattgtctcccca 320

                                                                       
Query: 121 ccctctcatcaaggtaattaaagcagatcatttttggtctgaaacatcttataatgaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctctcatcaaggtaattaaagcagatcatttttggtctgaaacatcttataatgaagt 380

                                                                       
Query: 181 aattggcttggtttttttttctcctcctgtcaaaagtcaacaataaattaacagttgtat 240
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattggcttg--ttttttttctcctcctgtcaaaagtcaacaataaattaacagttgtat 438

                                                          
Query: 241 tgtcatctatcctatttcaaagtcataatgctattctcttaggaaat 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgtcatctatcctatttcaaagtcataatgctattctcttaggaaat 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 685
Length adjustment: 9
Effective length of query: 278
Effective length of database: 676
Effective search space:   187928
Effective search space used:   187928
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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