BAC Information

Click to search

BAC

Clone NameMSMg01-312B23
ChromosomeX (Build37)
Map Location 55,036,877 - 55,037,238
singlet/doubletsinglet
Overlap genenone
Upstream geneFhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6, Rbmx, Snord61, Gm364, Gpr101, Aldoa-ps, EG666441, LOC666447
Downstream geneZic3, LOC631581, LOC631621
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312B23.T7 (MSMg01no312_b23.b1)MSMg01-312B23.TJ (MSMg01no312_b23.g1)
ACCAG434428AG434429
length740739
length of high quality
(start - end)		695 (39 - 733)672 (68 - 739)
definitionCHROMAT_FILE: MSMg01no312_b23.b1 PHD_FILE: MSMg01no312_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:08 2005CHROMAT_FILE: MSMg01no312_b23.g1 PHD_FILE: MSMg01no312_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
AACTGAGGAATACCGAATGGCTGAGAAGTACCTGAAAAAAATCTTCAACA
TCCTTAATCATCAGGGAAATGAAAATCAAAACAACCCTGAGATTTCACCT
CACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCT
GGCAAGGATGTGGAGAAAGAGGAACATTCCTCCATTGCTGGTGGGATTGC
AAGCTGGTACAACCACTGTGGAAATCAGTTTGGCAGTTCCTCAGAAAATT
GGACATAGTACTACTGGGTGATCCAGCAATACAAGTCCTGGGCATATACC
CAGAAGATCTTCCAACTTGTAATAAGGACACATGCTCTACTATGTTCATA
GCAGCCTTATTTATAATACCCAGAAGCTGGAAAGAACCCAGATGTCCCTC
AACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACT
AGTCAGCTATTAAAAACAATGAATTTATGAAATTCTTAAACAAATGGATG
GATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACAC
ACATGATATTGCACTCACTGGTTAGTGGATATTAGCTCAGAAACTTAGAA
TACCCAAGATACAATTTGAAAAACTCATGAAACTCAAGAAGAAGGAAGAC
CAAAGTGTGGATACTTCGTTCCTTCTTATAAGGGGGAACA

AGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTAGTACTCCTTCACAGCCTGCATCTTACAGTTA
GGCACTAAGTTACAGTCTTTCATAAATATTGTGTGCCCATTGCCTCTCAT
GTACACATCATGATTTGACATAAAGTCCCAGAGAACAAGCATCAAGGGTC
TCATATTGTTTCATTGCCTGTCACAGTTTGATGAAGAAGGTGGCATGATG
GACGGGCATACAGGACAAGGAATTGATAGTTACAACCAGCCAGCAGCCAG
CAAGGAACTGAGACCCTTCATCCAATAGCTCTCCAGGAGCTAAGTTCTAC
CAAATGACCATGTGAATTTGGGAGTTTTTTTCTTCCCCAGTGCAACCTTC
AAATATGACCCTAACCTTCACTGCAGCTTGGGAAAGACCCTGAAAGAGAA
GACCCAGATAAGCCAATCCTGACTTTCTGACCCAGAGCCTGTGACATAGT
AAATATGCTCTAAGGGTTTTTTGTTATTGTTGTTTGTTTTGCCTTGAGTA
ATTTGCTATCCAATATTAGGTAACTAGTAGTGTGAGTCTAGCTGGGTGAT
TCCTAGGAGAGATGTCATAAATACTATGGAATCGGGCCTTTGCAAGACAG
AAGTACATTCTCTGGTGACAAATGTTTGAGAGTAGTATTACACTGATTGG
ATGGAGGTCAGGACCCTTAAGTGATTAAGCAAGTTAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_b23.g1 MSMg01no312_b23.g1 CHROMAT_FILE:
MSMg01no312_b23.g1 PHD_FILE: MSMg01no312_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:08 2005
         (672 letters)



>mm_chrX_55036877_55037948
          Length = 1072

 Score =  685 bits (354), Expect = 0.0
 Identities = 360/362 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtactccttcacagcctgcatcttacagttaggcactaagttacagtctttcataaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tagtactccttcacagcctgcatcttacagttaggcactaagttacagtctttcataaat 303

                                                                       
Query: 61  attgtgtgcccattgcctctcatgtacacatcatgatttgacataaagtcccagagaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 attgtgtgcccattgcctctcatgtacacatcatgatttgacataaagtcccagagaaca 243

                                                                       
Query: 121 agcatcaagggtctcatattgtttcattgcctgtcacagtttgatgaagaaggtggcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agcatcaagggtctcatattgtttcattgcctgtcacagtttgatgaagaaggtggcatg 183

                                                                       
Query: 181 atggacgggcatacaggacaaggaattgatagttacaaccagccagcagccagcaaggaa 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 atggacgggcatgcaggacaaggaattgatagttacaaccagccagcagccagcaaggaa 123

                                                                       
Query: 241 ctgagacccttcatccaatagctctccaggagctaagttctaccaaatgaccatgtgaat 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 122 ctgagacccttcatccaatagctctccaggaactaagttctaccaaatgaccatgtgaat 63

                                                                       
Query: 301 ttgggagtttttttcttccccagtgcaaccttcaaatatgaccctaaccttcactgcagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  ttgggagtttttttcttccccagtgcaaccttcaaatatgaccctaaccttcactgcagc 3

             
Query: 361 tt 362
           ||
Sbjct: 2   tt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |