BAC Information

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BAC

Clone NameMSMg01-313C02
ChromosomeX (Build37)
Map Location 18,881,801 - 18,882,156
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043952, 4930578C19Rik, LOC100043098, EG628855, LOC385333, EG628871
Downstream geneLOC100043953, BC049702, LOC675558, LOC668995, LOC385336, Chst7, Slc9a7, LOC668277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313C02.T7 (MSMg01no313_c02.b1)MSMg01-313C02.TJ (MSMg01no313_c02.g1)
ACCAG435147AG435148
length1,2581,244
length of high quality
(start - end)
722 (129 - 850)356 (501 - 856)
definitionCHROMAT_FILE: MSMg01no313_c02.b1 PHD_FILE: MSMg01no313_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:28 2005CHROMAT_FILE: MSMg01no313_c02.g1 PHD_FILE: MSMg01no313_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCGTTTTNNNNNNNNGTCTGTGGGCGCTATAGACTCCTATAGGGAGAGG
ATCCGCGGAATTCTTTGTTCAGTTCTGACCCTTATTTTTTAATGGGGTTA
TTTGATTTTCTGAAGTCCACTTTCATGAGTTCTTTATATATGTTGGATAT
TAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCTTTTCTGTTG
GTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGG
AGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCAT
TGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTT
TCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGT
TCCTTGATTCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATC
GATTCGCATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGT
TGAAACTGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTTGAAG
ATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATT
CCATTGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCA
CAATTGCTCTGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCGCCAGAA
GTTCTTTTATCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTGTTATT
CCAGACAAATTTGCAAATTGCTCCTTCCAATTCGTTGAAGAATTGAGTTG
GAATTTTGATGGGGATTGCATTGAATCTGTAGATTGCTTTTGGCAAGATA
GCCATTTTTACCATGTTGATCCTGCCAATCCATGAGCATGGGAGATCTTT
CCATCTTCTGAGATCTTCCTTAATTTCTTTCTTCAGAGATTTGAAGNTTT
TATCATACAGATCTTTCATTTCCTTAGTTAGAGCCCCGCCCAGAAATTTT
ATATTATTTGGGGCTATTTGAAAAGGGGGTTGTTTCCCCAATTTCCTTTC
TCCCCCGGTTTATTTTTGTTAAAAAGAAAGGCCCTGGATTGTTTGGAATT
ATTTTATATCCCCCTCTTTTCCCCAACCGTTTTTTCAGGTTTGAAAAATT
CCCCGCAAATTTTATGGGCCCTATTTATTTACCTACATTCTTTCGAGAAA
GAAATGTTGTTCTCCCTTTCTCTTTTAATCCCCCCCTCTCTTTTTGGTGG
AAAGACGC
NNNCCTTTGAGGCGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAATACTGTGGTAGACCATTGCCTAGCT
ATTGTGCACTCTAATTATGGTGGCCTATTCTAGATAGAATTCTATCTTAT
AAAGATAAGATGCCATTCATGAGGTCAAGGACTCTGTTCATCTGGGTTTT
CTAAGGATGACCACTAAAATCATGACTTCAGTGTCAGAAAGAGATCAGCC
AAGTGTCTGATATAAAATGAACCCTGGAGGGTCTCTTTGGCTCTCAAGTT
TATGAATTTAACAAAACAATTATCCTAGAAAAAGTATCTAAGTCCTTACA
CAAATCCATCATGAGGCTAAGGGTATAGCTTGGGAAGAGAGCATTTGCCT
AGCATGAGCGAGTTTCTCGGTTCCATTTCCAGTATTGAACAACCTAATAT
TTTTTTTTTGCCCCCCATGGNCTCAATAGACCCAGATAAAAAAAGGAGTT
GGCAAATAAAAAGAAAATTAACCAGCAAAACAAAATGAGGTCGAACCACT
CATTAATTACCTAATATGTGATTCCTGCTTTATTGGAATTGTAGATATTT
TTGTTGTAGTAAGATGTGGGCAAATACAGAATCAATGTTGAGTGACACGT
CTGCTTCTCCTCTTTCTCCTAACAAAATAATTCTGTGTTTACTGGTCAAA
TACACACCTGGGGAGCATTCCAGGAACACTTCGGGGTAACTCCAGACAGT
GACCTGTATACCACTGTCACTTTATCCTCACCCTTGGCCTGAGCACAACT
TCAGGTCTCCCCTCAACGTTGGTTTCAGATGTCTGACATACCATGTTCAG
AACTTCATATCTAATAAAAGTATGCAGTCTAATGTAGAGAGGCTTTTAAA
CTTGCAAACTGCTTGATATCCAAAGACCATAATGGAGACTTGCTCAAAAT
AGGACTTATGTTGAAATCTTTTGAATAGGCCATGCCTAAAAGCTTCTGCA
GTGACTAGAATTTTTTAGGTTTGGATTGGCCAAGTGGGCACCCATTACCC
TTGGCCTTTATCAAGACCTTAAAAGGGGTTACGGCACTTGAAAACCGGTT
TCTTTGAATTTTGACATTTTAAAAATTATTAGGGCTATTTTTCTCCGGGG
GGACCGGGCTGTGTAAAAAACAATTATGGGAGGGGATTCTCTCCCCCCTT
GTTCTCAGGATAAAAACTACCCCTCCCTTTGTAAGAGATTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_c02.g1 MSMg01no313_c02.g1 CHROMAT_FILE:
MSMg01no313_c02.g1 PHD_FILE: MSMg01no313_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:29 2005
         (356 letters)



>mm_chrX_18881601_18882356
          Length = 756

 Score =  658 bits (340), Expect = 0.0
 Identities = 352/356 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcaaataaaaagaaaattaaccagcaaaacaaaatgaggtcgaaccactcattaattac 60
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 556 ggcaaataaaaagaaaattaaccagcaaaacaaaatgaggtcggaccactcattcattac 497

                                                                       
Query: 61  ctaatatgtgattcctgctttattggaattgtagatatttttgttgtagtaagatgtggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ctaatatgtgattcctgctttattggaattgtagatatttttgttgtagtaagatgtggg 437

                                                                       
Query: 121 caaatacagaatcaatgttgagtgacacgtctgcttctcctctttctcctaacaaaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 caaatacagaatcaatgttgagtgacacgtctgcttctcctctttctcctaacaaaataa 377

                                                                       
Query: 181 ttctgtgtttactggtcaaatacacacctggggagcattccaggaacacttcggggtaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 376 ttctgtgtttactggtcaaatacacacctggggagcattccaggaacacctcggggtaac 317

                                                                       
Query: 241 tccagacagtgacctgtataccactgtcactttatcctcacccttggcctgagcacaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tccagacagtgacctgtataccactgtcactttatcctcacccttggcctgagcacaact 257

                                                                   
Query: 301 tcaggtctcccctcaacgttggtttcagatgtctgacataccatgttcagaacttc 356
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tcaggtctcccctcaacattggtttcagatgtctgacataccatgttcagaacttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)